Variant report

Variant	rs28416486
Chromosome Location	chr6:92155369-92155370
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:92150162..92151691-chr6:92154125..92155845,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10080273	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10080846	1.00[EUR][1000 genomes]
rs58764630	1.00[EUR][1000 genomes]
rs6917407	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6917891	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6937868	1.00[EUR][1000 genomes]
rs73753712	1.00[EUR][1000 genomes]
rs73753713	1.00[EUR][1000 genomes]
rs73753718	1.00[EUR][1000 genomes]
rs73753762	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753798	1.00[EUR][1000 genomes]
rs73755934	1.00[EUR][1000 genomes]
rs7746254	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9294498	1.00[EUR][1000 genomes]
rs9444877	1.00[EUR][1000 genomes]
rs9444878	1.00[EUR][1000 genomes]
rs9444879	1.00[EUR][1000 genomes]
rs9444880	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9451697	1.00[EUR][1000 genomes]
rs9451699	1.00[EUR][1000 genomes]
rs9451703	1.00[EUR][1000 genomes]
rs9451704	1.00[EUR][1000 genomes]
rs9451711	1.00[EUR][1000 genomes]
rs9451712	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752130	chr6:91740447-92196479	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1017467	chr6:91802015-92417554	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv538360	chr6:91802015-92417554	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv830727	chr6:91988380-92155581	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1025913	chr6:92103872-92258396	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv538361	chr6:92103872-92258396	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:92152200-92159000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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