Variant report

Variant	rs10080992
Chromosome Location	chr6:151094259-151094260
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150735006..150737678-chr6:151094052..151096200,2	K562	blood:
2	chr6:151086969..151088528-chr6:151093504..151095513,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs6925636	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9478130	1.00[AMR][1000 genomes]
rs9478131	1.00[AMR][1000 genomes]
rs9478813	1.00[AMR][1000 genomes]
rs9478818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030326	chr6:150967665-151641372	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1019919	chr6:151028969-151161789	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv538474	chr6:151028969-151161789	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:151061600-151112200	Weak transcription	Right Atrium	heart
2	chr6:151075600-151094400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:151086000-151097800	Weak transcription	Lung	lung
4	chr6:151086000-151098000	Weak transcription	Liver	Liver
5	chr6:151086000-151098000	Weak transcription	Spleen	Spleen
6	chr6:151086000-151121400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:151087600-151109200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:151088200-151096600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:151088200-151121400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:151089000-151094400	Strong transcription	Fetal Thymus	thymus
11	chr6:151089000-151096200	Weak transcription	HMEC	breast
12	chr6:151089000-151097000	Weak transcription	Ovary	ovary
13	chr6:151089000-151098000	Weak transcription	Esophagus	oesophagus
14	chr6:151089000-151105200	Weak transcription	Left Ventricle	heart
15	chr6:151089000-151109800	Weak transcription	Fetal Brain Male	brain
16	chr6:151089200-151094400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:151089200-151094400	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:151089200-151095200	Weak transcription	Adipose Nuclei	Adipose
19	chr6:151089400-151096600	Weak transcription	NH-A	brain
20	chr6:151089800-151096600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr6:151090200-151095200	Weak transcription	Fetal Lung	lung
22	chr6:151090200-151098000	Weak transcription	Fetal Kidney	kidney
23	chr6:151091000-151125800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr6:151091200-151094600	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr6:151091400-151099000	Weak transcription	Placenta	Placenta
26	chr6:151092200-151094400	Weak transcription	Fetal Stomach	stomach
27	chr6:151092200-151095000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:151092200-151097800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:151092800-151096600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr6:151093000-151095800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:151093000-151100400	Strong transcription	Primary B cells from cord blood	blood
32	chr6:151093000-151109400	Weak transcription	Fetal Heart	heart
33	chr6:151093200-151094800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr6:151093600-151094800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:151094000-151094400	Weak transcription	Thymus	Thymus
36	chr6:151094000-151095600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
37	chr6:151094200-151105400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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