Variant report

Variant	rs6925636
Chromosome Location	chr6:151088064-151088065
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:19)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:19 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr6:151087200-151088430	ECC-1	luminal epithelium:	n/a	n/a
2	YY1	chr6:151087786-151088276	ECC-1	luminal epithelium:	n/a	chr6:151088050-151088061
3	TEAD4	chr6:151087308-151088241	ECC-1	luminal epithelium:	n/a	n/a
4	NFIC	chr6:151087198-151088317	ECC-1	luminal epithelium:	n/a	chr6:151087805-151087833
5	NR3C1	chr6:151087817-151088094	ECC-1	luminal epithelium:	n/a	n/a
6	RAD21	chr6:151087455-151088288	ECC-1	luminal epithelium:	n/a	n/a
7	EP300	chr6:151087099-151088449	ECC-1	luminal epithelium:	n/a	n/a
8	MAX	chr6:151087288-151088342	ECC-1	luminal epithelium:	n/a	n/a
9	FOXM1	chr6:151087139-151088354	ECC-1	luminal epithelium:	n/a	n/a
10	ESR1	chr6:151087325-151088164	ECC-1	luminal epithelium:	n/a	n/a
11	EP300	chr6:151087232-151088338	ECC-1	luminal epithelium:	n/a	n/a
12	NFIC	chr6:151086769-151088400	ECC-1	luminal epithelium:	n/a	chr6:151087805-151087833
13	MAX	chr6:151087360-151088268	ECC-1	luminal epithelium:	n/a	n/a
14	YY1	chr6:151087827-151088278	ECC-1	luminal epithelium:	n/a	chr6:151088050-151088061
15	FOXM1	chr6:151087169-151088341	ECC-1	luminal epithelium:	n/a	n/a
16	TCF12	chr6:151087241-151088277	ECC-1	luminal epithelium:	n/a	n/a
17	TEAD4	chr6:151087205-151088321	ECC-1	luminal epithelium:	n/a	n/a
18	ESR1	chr6:151087704-151088180	ECC-1	luminal epithelium:	n/a	n/a
19	ESR1	chr6:151087300-151088140	ECC-1	luminal epithelium:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:151086969..151088528-chr6:151093504..151095513,2	MCF-7	breast:
2	chr6:151073651..151077490-chr6:151086273..151089717,3	K562	blood:

No data

Variant related genes	Relation type
PLEKHG1	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10080992	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9478130	1.00[AMR][1000 genomes]
rs9478131	1.00[AMR][1000 genomes]
rs9478813	1.00[AMR][1000 genomes]
rs9478818	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030326	chr6:150967665-151641372	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1019919	chr6:151028969-151161789	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv538474	chr6:151028969-151161789	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:151061600-151112200	Weak transcription	Right Atrium	heart
2	chr6:151075200-151093600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr6:151075600-151094400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:151080600-151094200	Weak transcription	Fetal Intestine Small	intestine
5	chr6:151084600-151088600	Enhancers	Fetal Heart	heart
6	chr6:151084800-151089200	Enhancers	Brain Germinal Matrix	brain
7	chr6:151085000-151088600	Enhancers	Fetal Kidney	kidney
8	chr6:151085000-151089200	Enhancers	Fetal Muscle Leg	muscle
9	chr6:151085400-151089400	Weak transcription	Thymus	Thymus
10	chr6:151085400-151090200	Enhancers	Fetal Lung	lung
11	chr6:151085600-151088400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr6:151085600-151088800	Enhancers	Brain Anterior Caudate	brain
13	chr6:151085600-151089000	Enhancers	Brain Hippocampus Middle	brain
14	chr6:151085800-151090000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:151085800-151091600	Weak transcription	Psoas Muscle	Psoas
16	chr6:151085800-151093800	Weak transcription	Fetal Intestine Large	intestine
17	chr6:151086000-151088800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:151086000-151088800	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr6:151086000-151089200	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr6:151086000-151089800	Weak transcription	Fetal Brain Female	brain
21	chr6:151086000-151089800	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr6:151086000-151090000	Weak transcription	Placenta	Placenta
23	chr6:151086000-151097800	Weak transcription	Lung	lung
24	chr6:151086000-151098000	Weak transcription	Liver	Liver
25	chr6:151086000-151098000	Weak transcription	Spleen	Spleen
26	chr6:151086000-151121400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr6:151086200-151088200	Enhancers	GM12878-XiMat	blood
28	chr6:151086200-151089400	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr6:151086400-151089600	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr6:151086600-151089400	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr6:151086600-151089400	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr6:151086800-151091800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:151087000-151088600	Enhancers	Adipose Nuclei	Adipose
34	chr6:151087000-151088800	Enhancers	NH-A	brain
35	chr6:151087000-151089200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr6:151087200-151088600	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr6:151087200-151089000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:151087200-151089800	Enhancers	Brain Substantia Nigra	brain
39	chr6:151087400-151088200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:151087400-151088200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr6:151087400-151088200	Enhancers	Fetal Stomach	stomach
42	chr6:151087400-151088200	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr6:151087400-151088400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr6:151087400-151088600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr6:151087400-151088600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:151087400-151088600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr6:151087400-151088600	Enhancers	Ovary	ovary
48	chr6:151087400-151089200	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr6:151087600-151088200	Enhancers	Small Intestine	intestine
50	chr6:151087600-151088400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain

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