Variant report

Variant	rs9478818
Chromosome Location	chr6:151099350-151099351
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10080992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6925636	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9478130	1.00[AMR][1000 genomes]
rs9478131	1.00[AMR][1000 genomes]
rs9478813	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030326	chr6:150967665-151641372	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1019919	chr6:151028969-151161789	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv538474	chr6:151028969-151161789	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv3372927	chr6:151095559-151100857	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3436812	chr6:151096559-151099857	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	n/a	n/a	inside rSNPs	diseases
6	esv3405464	chr6:151096909-151099607	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:151061600-151112200	Weak transcription	Right Atrium	heart
2	chr6:151086000-151121400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:151087600-151109200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:151088200-151121400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:151089000-151105200	Weak transcription	Left Ventricle	heart
6	chr6:151089000-151109800	Weak transcription	Fetal Brain Male	brain
7	chr6:151091000-151125800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:151093000-151100400	Strong transcription	Primary B cells from cord blood	blood
9	chr6:151093000-151109400	Weak transcription	Fetal Heart	heart
10	chr6:151094200-151105400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:151096000-151100600	Strong transcription	Fetal Thymus	thymus
12	chr6:151096800-151100800	Strong transcription	Thymus	Thymus
13	chr6:151097200-151105200	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:151097400-151099400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr6:151097400-151100600	Weak transcription	Fetal Intestine Small	intestine
16	chr6:151097400-151101600	Weak transcription	Primary T cells from cord blood	blood
17	chr6:151097400-151108400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr6:151097400-151108400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:151097400-151109200	Weak transcription	Fetal Brain Female	brain
20	chr6:151097400-151109600	Weak transcription	Brain Substantia Nigra	brain
21	chr6:151097600-151102200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:151097600-151103000	Weak transcription	Brain Anterior Caudate	brain
23	chr6:151097600-151134800	Weak transcription	HUVEC	blood vessel
24	chr6:151098000-151100800	Strong transcription	Primary B cells from peripheral blood	blood
25	chr6:151098200-151100000	Weak transcription	Adipose Nuclei	Adipose
26	chr6:151098400-151099400	Strong transcription	Spleen	Spleen
27	chr6:151098400-151108800	Weak transcription	Fetal Kidney	kidney
28	chr6:151098400-151109600	Weak transcription	Esophagus	oesophagus
29	chr6:151098400-151130400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr6:151098800-151099400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr6:151098800-151100400	Strong transcription	Cortex derived primary cultured neurospheres	brain
32	chr6:151098800-151108400	Weak transcription	Liver	Liver
33	chr6:151098800-151108600	Weak transcription	Duodenum Mucosa	Duodenum
34	chr6:151098800-151130000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:151099000-151100400	Strong transcription	Placenta	Placenta
36	chr6:151099000-151101800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr6:151099200-151108600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr6:151099200-151108600	Weak transcription	Fetal Stomach	stomach
39	chr6:151099200-151109800	Weak transcription	Aorta	Aorta
40	chr6:151099200-151111800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:151099200-151116400	Weak transcription	Lung	lung

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