Variant report

Variant	rs10081203
Chromosome Location	chr7:108222970-108222971
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:108214879..108218601-chr7:108220209..108223552,3	MCF-7	breast:
2	chr7:108208678..108213209-chr7:108221892..108226681,7	MCF-7	breast:
3	chr7:108222887..108224453-chr7:108229527..108232044,2	K562	blood:
4	chr7:108221854..108223398-chr7:108224330..108226111,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177683	Chromatin interaction
ENSG00000128590	Chromatin interaction
ENSG00000135241	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10215273	0.83[AFR][1000 genomes]
rs10270011	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10953575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1544517	0.81[AFR][1000 genomes]
rs2190896	0.91[AFR][1000 genomes]
rs40917	0.81[AFR][1000 genomes]
rs40920	0.83[AFR][1000 genomes]
rs4140914	0.88[AFR][1000 genomes]
rs6943408	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108214400-108225000	Weak transcription	Fetal Brain Male	brain
2	chr7:108216200-108223000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:108216200-108224600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:108216400-108229400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:108216800-108224600	Weak transcription	NHEK	skin
6	chr7:108220600-108223200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr7:108220600-108224800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:108221000-108223800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:108221000-108224600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:108221000-108229000	Weak transcription	Right Ventricle	heart
11	chr7:108221200-108223000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr7:108221200-108226200	Weak transcription	Right Atrium	heart
13	chr7:108221200-108229200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr7:108221600-108223200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr7:108221800-108223000	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr7:108222000-108223200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr7:108222000-108223200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:108222200-108223000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr7:108222200-108223000	Enhancers	HMEC	breast
20	chr7:108222200-108223200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr7:108222200-108223200	Enhancers	Adipose Nuclei	Adipose
22	chr7:108222200-108223200	Enhancers	Fetal Intestine Large	intestine
23	chr7:108222200-108223200	Enhancers	HSMMtube	muscle
24	chr7:108222200-108225000	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr7:108222400-108223000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr7:108222400-108223000	Enhancers	Fetal Heart	heart
27	chr7:108222400-108223000	Enhancers	Placenta Amnion	Placenta Amnion
28	chr7:108222400-108223200	Enhancers	H1 Cell Line	embryonic stem cell
29	chr7:108222400-108223200	Enhancers	Fetal Intestine Small	intestine
30	chr7:108222600-108223000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:108222600-108223000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
32	chr7:108222600-108223000	Enhancers	Placenta	Placenta
33	chr7:108222600-108223000	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr7:108222600-108223000	Enhancers	Small Intestine	intestine
35	chr7:108222600-108223000	Enhancers	HSMM	muscle
36	chr7:108222600-108223200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr7:108222600-108223200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr7:108222600-108223200	Enhancers	H9 Cell Line	embryonic stem cell
39	chr7:108222600-108223200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr7:108222600-108223200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr7:108222800-108223000	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr7:108222800-108223000	Enhancers	Fetal Kidney	kidney
43	chr7:108222800-108223000	Enhancers	Pancreas	Pancrea
44	chr7:108222800-108223200	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr7:108222800-108223200	Enhancers	HepG2	liver

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