Variant report

Variant	rs10953575
Chromosome Location	chr7:108219113-108219114
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:108217454..108219397-chr7:108235662..108238254,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10081203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10215273	0.81[YRI][hapmap];0.83[AFR][1000 genomes]
rs10270011	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1544517	0.81[AFR][1000 genomes]
rs2190896	0.91[AFR][1000 genomes]
rs40917	0.81[AFR][1000 genomes]
rs40920	0.83[AFR][1000 genomes]
rs4140914	0.88[AFR][1000 genomes]
rs6943408	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108211200-108219400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:108211200-108219600	Weak transcription	Lung	lung
3	chr7:108211400-108219400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:108211400-108219600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:108211400-108219600	Weak transcription	Colonic Mucosa	Colon
6	chr7:108211400-108219600	Weak transcription	Esophagus	oesophagus
7	chr7:108211400-108219600	Weak transcription	Ovary	ovary
8	chr7:108211400-108219800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:108211600-108219200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr7:108211600-108219200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr7:108211600-108219400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr7:108211600-108219400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:108211600-108220000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr7:108211800-108219800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:108212000-108219400	Weak transcription	Brain Germinal Matrix	brain
16	chr7:108212000-108219600	Weak transcription	Fetal Stomach	stomach
17	chr7:108212000-108222600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr7:108212200-108219400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr7:108212200-108219600	Weak transcription	Brain Hippocampus Middle	brain
20	chr7:108212200-108219800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr7:108212400-108219200	Weak transcription	Fetal Brain Female	brain
22	chr7:108212400-108219400	Weak transcription	Aorta	Aorta
23	chr7:108212400-108219400	Weak transcription	Brain Anterior Caudate	brain
24	chr7:108212400-108219400	Weak transcription	Fetal Intestine Small	intestine
25	chr7:108212400-108219400	Weak transcription	Gastric	stomach
26	chr7:108212400-108219400	Weak transcription	Right Ventricle	heart
27	chr7:108212400-108219600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr7:108212400-108219600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr7:108212400-108219800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr7:108212400-108220000	Weak transcription	Right Atrium	heart
31	chr7:108212400-108220200	Weak transcription	Psoas Muscle	Psoas
32	chr7:108212400-108221600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr7:108212600-108219400	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr7:108212600-108219400	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr7:108212600-108220400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr7:108213000-108222200	Weak transcription	HMEC	breast
37	chr7:108214000-108219600	Weak transcription	Brain Substantia Nigra	brain
38	chr7:108214200-108219200	Weak transcription	Colon Smooth Muscle	Colon
39	chr7:108214400-108219400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr7:108214400-108219800	Weak transcription	Fetal Lung	lung
41	chr7:108214400-108222200	Weak transcription	HSMMtube	muscle
42	chr7:108214400-108222600	Weak transcription	Small Intestine	intestine
43	chr7:108214400-108225000	Weak transcription	Fetal Brain Male	brain
44	chr7:108214600-108219400	Strong transcription	Liver	Liver
45	chr7:108214600-108219600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr7:108214600-108222200	Weak transcription	Fetal Kidney	kidney
47	chr7:108214800-108219600	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr7:108214800-108219600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr7:108214800-108219600	Weak transcription	Brain Angular Gyrus	brain
50	chr7:108214800-108219600	Weak transcription	Brain Cingulate Gyrus	brain

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