Variant report

Variant	rs10215273
Chromosome Location	chr7:108239152-108239153
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10081203	0.83[AFR][1000 genomes]
rs10953575	0.83[AFR][1000 genomes]
rs2190896	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35846666	1.00[EUR][1000 genomes]
rs40917	0.82[YRI][hapmap]
rs4140914	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55645791	1.00[EUR][1000 genomes]
rs56231121	1.00[EUR][1000 genomes]
rs57881876	1.00[EUR][1000 genomes]
rs6943408	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73426189	1.00[EUR][1000 genomes]
rs73426193	1.00[EUR][1000 genomes]
rs73426197	1.00[EUR][1000 genomes]
rs73713110	1.00[EUR][1000 genomes]
rs73713177	1.00[EUR][1000 genomes]
rs73713178	1.00[EUR][1000 genomes]
rs73713180	1.00[EUR][1000 genomes]
rs73713181	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108234200-108239200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:108234800-108244000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:108238000-108239200	Enhancers	Fetal Brain Male	brain
4	chr7:108238200-108240000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:108238200-108240400	Enhancers	Brain Germinal Matrix	brain
6	chr7:108238400-108240000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr7:108238600-108240000	Enhancers	Fetal Lung	lung
8	chr7:108238800-108239200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:108238800-108239200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr7:108238800-108239600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:108238800-108239800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr7:108238800-108239800	Enhancers	Fetal Stomach	stomach
13	chr7:108239000-108239200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr7:108239000-108239200	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr7:108239000-108239600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr7:108239000-108239800	Active TSS	Brain Anterior Caudate	brain
17	chr7:108239000-108239800	Flanking Active TSS	Fetal Brain Female	brain
18	chr7:108239000-108240000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr7:108239000-108240200	Enhancers	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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