Variant report

Variant	rs73713110
Chromosome Location	chr7:108100945-108100946
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr7:108099888-108103052	SK-N-SH	brain:	n/a	chr7:108102354-108102363 chr7:108100633-108100647 chr7:108100695-108100709 chr7:108099988-108100002 chr7:108100689-108100703 chr7:108100635-108100649 chr7:108100701-108100715
2	CTCF	chr7:108100376-108101004	GM12878	blood:	n/a	chr7:108100979-108100987 chr7:108100609-108100617
3	RAD21	chr7:108099865-108103108	SK-N-SH	brain:	n/a	chr7:108100590-108100609
4	CTCF	chr7:108100820-108100970	AG09319	gingival:	n/a	n/a
5	SMC3	chr7:108099880-108100981	SK-N-SH	brain:	n/a	n/a
6	CTCF	chr7:108100900-108101050	GM06990	blood:	n/a	chr7:108100979-108100987
7	CTCF	chr7:108100166-108101111	A549	lung:	n/a	chr7:108100979-108100987 chr7:108100609-108100617
8	CTCF	chr7:108100262-108101007	MCF-7	breast:	n/a	chr7:108100979-108100987 chr7:108100609-108100617
9	CTCF	chr7:108099809-108101415	SK-N-SH	brain:	n/a	chr7:108100979-108100987 chr7:108100609-108100617
10	CTCF	chr7:108100940-108101090	HCM	heart:	n/a	chr7:108100979-108100987
11	CTCF	chr7:108100840-108100990	HRE	kidney:	n/a	chr7:108100979-108100987

No.	Distal block	Cell Line	Cell type
1	chr7:108090194..108091696-chr7:108099610..108101665,2	K562	blood:
2	chr7:108094254..108096481-chr7:108100316..108102970,2	K562	blood:
3	chr7:107821293..107822074-chr7:108100164..108101119,3	MCF-7	breast:
4	chr7:108092620..108097023-chr7:108100316..108104112,6	K562	blood:
5	chr7:108095530..108098596-chr7:108100575..108103691,3	MCF-7	breast:

Variant related genes	Relation type
NRCAM	TF binding region
ENSG00000091129	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10215273	1.00[EUR][1000 genomes]
rs2190896	1.00[EUR][1000 genomes]
rs35846666	1.00[EUR][1000 genomes]
rs4140914	1.00[EUR][1000 genomes]
rs55645791	1.00[EUR][1000 genomes]
rs56231121	1.00[EUR][1000 genomes]
rs57881876	1.00[EUR][1000 genomes]
rs6943408	1.00[EUR][1000 genomes]
rs73426189	1.00[EUR][1000 genomes]
rs73426193	1.00[EUR][1000 genomes]
rs73426197	1.00[EUR][1000 genomes]
rs73713177	1.00[EUR][1000 genomes]
rs73713178	1.00[EUR][1000 genomes]
rs73713180	1.00[EUR][1000 genomes]
rs73713181	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108097200-108118000	Weak transcription	Aorta	Aorta
2	chr7:108097800-108101400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:108097800-108101600	Weak transcription	Pancreas	Pancrea
4	chr7:108097800-108103200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr7:108098000-108101200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:108098200-108140600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:108100000-108101000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:108100000-108101000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:108100000-108101400	Enhancers	A549	lung
10	chr7:108100000-108102800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:108100400-108101000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:108100400-108102200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr7:108100400-108103000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:108100400-108106600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr7:108100600-108101000	Enhancers	Primary T cells from cord blood	blood
16	chr7:108100600-108101400	Enhancers	Osteobl	bone
17	chr7:108100800-108102200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr7:108100800-108102800	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr7:108100800-108103200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr7:108100800-108108800	Weak transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links