Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:108209177..108212583-chr7:108250280..108255068,5	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DNAJB9-1	chr7:108254377-108254711	ENSG00000225647

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10215273	1.00[EUR][1000 genomes]
rs10225537	1.00[AMR][1000 genomes]
rs10233349	1.00[AMR][1000 genomes]
rs10251214	1.00[AMR][1000 genomes]
rs10264392	1.00[AMR][1000 genomes]
rs10270262	1.00[AMR][1000 genomes]
rs17156077	1.00[AMR][1000 genomes]
rs2190896	1.00[EUR][1000 genomes]
rs28534983	1.00[AMR][1000 genomes]
rs28576424	1.00[AMR][1000 genomes]
rs28584565	1.00[AMR][1000 genomes]
rs35846666	1.00[EUR][1000 genomes]
rs4140914	1.00[EUR][1000 genomes]
rs56231121	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57881876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60796314	1.00[AMR][1000 genomes]
rs6943408	1.00[EUR][1000 genomes]
rs73426189	1.00[EUR][1000 genomes]
rs73426193	1.00[EUR][1000 genomes]
rs73426197	1.00[EUR][1000 genomes]
rs73713110	1.00[EUR][1000 genomes]
rs73713177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	esv1792680	chr7:108246985-108254739	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv275371	chr7:108250854-108257413	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108249200-108254800	Enhancers	Liver	Liver
2	chr7:108252000-108255000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:108252200-108255000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:108253800-108255400	Enhancers	HepG2	liver
5	chr7:108254000-108254800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:108254000-108254800	Enhancers	Colon Smooth Muscle	Colon
7	chr7:108254000-108255400	Enhancers	Fetal Lung	lung
8	chr7:108254000-108255600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr7:108254000-108255600	Enhancers	Fetal Kidney	kidney
10	chr7:108254200-108255000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:108254200-108255400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr7:108254200-108255600	Active TSS	Brain Germinal Matrix	brain
13	chr7:108254200-108255800	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr7:108254200-108258000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr7:108254200-108258600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr7:108254400-108255600	Enhancers	Fetal Brain Male	brain
17	chr7:108254400-108255800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr7:108254600-108255000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:108254600-108255400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr7:108254600-108258600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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