Variant report
| Variant | rs10251214 |
|---|---|
| Chromosome Location | chr7:108418218-108418219 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10225537 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10229561 | 1.00[EUR][1000 genomes] |
| rs10233349 | 1.00[AMR][1000 genomes] |
| rs10242118 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10264392 | 1.00[AMR][1000 genomes] |
| rs10268926 | 0.80[AFR][1000 genomes] |
| rs10269433 | 1.00[EUR][1000 genomes] |
| rs10270262 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17156077 | 1.00[AMR][1000 genomes] |
| rs28534983 | 1.00[AMR][1000 genomes] |
| rs28576424 | 1.00[AMR][1000 genomes] |
| rs28584565 | 1.00[AMR][1000 genomes] |
| rs28690916 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55645791 | 1.00[AMR][1000 genomes] |
| rs56231121 | 1.00[AMR][1000 genomes] |
| rs56892213 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57881876 | 1.00[AMR][1000 genomes] |
| rs60796314 | 1.00[AMR][1000 genomes] |
| rs6971377 | 1.00[AMR][1000 genomes] |
| rs6979246 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73713177 | 1.00[AMR][1000 genomes] |
| rs73713178 | 1.00[AMR][1000 genomes] |
| rs73713180 | 1.00[AMR][1000 genomes] |
| rs73713181 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv817371 | chr7:108199882-108649799 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 36 gene(s) | inside rSNPs | diseases |
| 2 | nsv1031096 | chr7:108334543-108596014 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv888944 | chr7:108348785-108433790 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:108418200-108419200 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
