Variant report

Variant	rs28534983
Chromosome Location	chr7:108261742-108261743
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10225537	1.00[AMR][1000 genomes]
rs10233349	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10242118	1.00[AMR][1000 genomes]
rs10249690	1.00[EUR][1000 genomes]
rs10251214	1.00[AMR][1000 genomes]
rs10264392	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10268111	1.00[EUR][1000 genomes]
rs10270262	1.00[AMR][1000 genomes]
rs17156077	1.00[AMR][1000 genomes]
rs28576424	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28584565	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55645791	1.00[AMR][1000 genomes]
rs56231121	1.00[AMR][1000 genomes]
rs57881876	1.00[AMR][1000 genomes]
rs60796314	1.00[AMR][1000 genomes]
rs73713177	1.00[AMR][1000 genomes]
rs73713178	1.00[AMR][1000 genomes]
rs73713180	1.00[AMR][1000 genomes]
rs73713181	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108257800-108270800	Weak transcription	Right Atrium	heart
2	chr7:108261000-108266400	Weak transcription	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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