Variant report

Variant	rs10242118
Chromosome Location	chr7:108453007-108453008
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10225537	1.00[AMR][1000 genomes]
rs10229561	1.00[EUR][1000 genomes]
rs10233349	1.00[AMR][1000 genomes]
rs10251214	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10264392	1.00[AMR][1000 genomes]
rs10269433	1.00[EUR][1000 genomes]
rs10270262	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17156077	1.00[AMR][1000 genomes]
rs28534983	1.00[AMR][1000 genomes]
rs28576424	1.00[AMR][1000 genomes]
rs28584565	1.00[AMR][1000 genomes]
rs28690916	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56892213	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60796314	1.00[AMR][1000 genomes]
rs6971377	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6979246	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1031096	chr7:108334543-108596014	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv888945	chr7:108445757-108521842	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108451600-108453800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:108452400-108456200	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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