Variant report

Variant	rs10225537
Chromosome Location	chr7:108418891-108418892
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10233349	1.00[AMR][1000 genomes]
rs10242118	1.00[AMR][1000 genomes]
rs10251214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10264392	1.00[AMR][1000 genomes]
rs10268926	0.80[AFR][1000 genomes]
rs10270262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17156077	1.00[AMR][1000 genomes]
rs28534983	1.00[AMR][1000 genomes]
rs28576424	1.00[AMR][1000 genomes]
rs28584565	1.00[AMR][1000 genomes]
rs28690916	1.00[AMR][1000 genomes]
rs55645791	1.00[AMR][1000 genomes]
rs56231121	1.00[AMR][1000 genomes]
rs56892213	1.00[AMR][1000 genomes]
rs57881876	1.00[AMR][1000 genomes]
rs60796314	1.00[AMR][1000 genomes]
rs6971377	1.00[AMR][1000 genomes]
rs6979246	1.00[AMR][1000 genomes]
rs73713177	1.00[AMR][1000 genomes]
rs73713178	1.00[AMR][1000 genomes]
rs73713180	1.00[AMR][1000 genomes]
rs73713181	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1031096	chr7:108334543-108596014	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv888944	chr7:108348785-108433790	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108418200-108419200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:108418400-108419000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:108418800-108419200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr7:108418800-108419200	Enhancers	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links