Variant report

Variant	rs6943408
Chromosome Location	chr7:108220982-108220983
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:108214879..108218601-chr7:108220209..108223552,3	MCF-7	breast:
2	chr7:108219591..108221299-chr7:108232211..108234837,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10081203	0.88[AFR][1000 genomes]
rs10215273	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10953575	0.88[AFR][1000 genomes]
rs2190896	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35846666	1.00[EUR][1000 genomes]
rs4140914	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55645791	1.00[EUR][1000 genomes]
rs56231121	1.00[EUR][1000 genomes]
rs57881876	1.00[EUR][1000 genomes]
rs73426189	1.00[EUR][1000 genomes]
rs73426193	1.00[EUR][1000 genomes]
rs73426197	1.00[EUR][1000 genomes]
rs73713110	1.00[EUR][1000 genomes]
rs73713177	1.00[EUR][1000 genomes]
rs73713178	1.00[EUR][1000 genomes]
rs73713180	1.00[EUR][1000 genomes]
rs73713181	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108212000-108222600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:108212400-108221600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr7:108213000-108222200	Weak transcription	HMEC	breast
4	chr7:108214400-108222200	Weak transcription	HSMMtube	muscle
5	chr7:108214400-108222600	Weak transcription	Small Intestine	intestine
6	chr7:108214400-108225000	Weak transcription	Fetal Brain Male	brain
7	chr7:108214600-108222200	Weak transcription	Fetal Kidney	kidney
8	chr7:108215800-108221600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr7:108216000-108222000	Weak transcription	HepG2	liver
10	chr7:108216200-108223000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:108216200-108224600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:108216400-108222400	Weak transcription	Fetal Heart	heart
13	chr7:108216400-108229400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:108216600-108222400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:108216800-108224600	Weak transcription	NHEK	skin
16	chr7:108217000-108222400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr7:108218600-108221600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
18	chr7:108219000-108221000	ZNF genes & repeats	Dnd41	blood
19	chr7:108219200-108221000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr7:108219200-108221000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr7:108219400-108221000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
22	chr7:108219400-108221000	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr7:108219400-108221000	ZNF genes & repeats	Liver	Liver
24	chr7:108219400-108221000	ZNF genes & repeats	Brain Germinal Matrix	brain
25	chr7:108219400-108221000	Strong transcription	Right Ventricle	heart
26	chr7:108219400-108221200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr7:108219400-108221200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
28	chr7:108219400-108221200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr7:108219400-108221200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr7:108219400-108221200	ZNF genes & repeats	Fetal Intestine Small	intestine
31	chr7:108219400-108221200	ZNF genes & repeats	Thymus	Thymus
32	chr7:108219600-108221000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
33	chr7:108219600-108221000	ZNF genes & repeats	Esophagus	oesophagus
34	chr7:108219600-108221000	Strong transcription	Skeletal Muscle Female	skeletal muscle
35	chr7:108219600-108221000	ZNF genes & repeats	Spleen	Spleen
36	chr7:108219600-108221200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
37	chr7:108219600-108221200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
38	chr7:108219600-108221200	ZNF genes & repeats	Fetal Stomach	stomach
39	chr7:108219600-108221200	ZNF genes & repeats	Lung	lung
40	chr7:108219800-108221000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr7:108219800-108221000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
42	chr7:108219800-108221000	ZNF genes & repeats	Placenta	Placenta
43	chr7:108219800-108221000	ZNF genes & repeats	Gastric	stomach
44	chr7:108219800-108221200	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
45	chr7:108219800-108221200	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
46	chr7:108219800-108221200	ZNF genes & repeats	Left Ventricle	heart
47	chr7:108219800-108221200	ZNF genes & repeats	Pancreas	Pancrea
48	chr7:108220000-108221200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
49	chr7:108220000-108221200	ZNF genes & repeats	Right Atrium	heart
50	chr7:108220200-108221000	Weak transcription	Rectal Smooth Muscle	rectum

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