Variant report

Variant	rs10081452
Chromosome Location	chr8:25488542-25488543
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11135879	0.98[ASN][1000 genomes]
rs12547187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12676878	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1425737	0.99[ASN][1000 genomes]
rs1425738	0.89[ASN][1000 genomes]
rs1425739	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17054049	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17054053	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17054097	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2433069	0.88[ASN][1000 genomes]
rs2433072	0.81[ASN][1000 genomes]
rs2433094	0.90[ASN][1000 genomes]
rs2433123	0.89[ASN][1000 genomes]
rs2467727	0.88[ASN][1000 genomes]
rs2467728	0.89[ASN][1000 genomes]
rs2467729	0.90[ASN][1000 genomes]
rs34730485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35695999	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4872336	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6982678	0.97[ASN][1000 genomes]
rs7825671	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7841547	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890689	chr8:25124350-25719075	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10081452	HR	cis	parietal	SCAN

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:25484800-25488600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr8:25484800-25489400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:25487400-25489600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:25487600-25490000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:25488200-25488600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr8:25488400-25488600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr8:25488400-25488600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr8:25488400-25488600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr8:25488400-25488600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:25488400-25488600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:25488400-25488600	Enhancers	Adipose Nuclei	Adipose
12	chr8:25488400-25488600	Bivalent Enhancer	Brain Angular Gyrus	brain
13	chr8:25488400-25488600	Enhancers	NHDF-Ad	bronchial
14	chr8:25488400-25488800	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr8:25488400-25488800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:25488400-25488800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr8:25488400-25488800	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
18	chr8:25488400-25488800	Flanking Active TSS	Fetal Lung	lung
19	chr8:25488400-25489200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr8:25488400-25489200	Active TSS	Brain Hippocampus Middle	brain
21	chr8:25488400-25489400	Enhancers	Fetal Brain Male	brain
22	chr8:25488400-25489400	Enhancers	Fetal Heart	heart
23	chr8:25488400-25489600	Active TSS	Brain Anterior Caudate	brain
24	chr8:25488400-25489800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr8:25488400-25490000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr8:25488400-25490000	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr8:25488400-25490000	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr8:25488400-25490200	Enhancers	H1 Cell Line	embryonic stem cell
29	chr8:25488400-25490200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr8:25488400-25490400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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