Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10081452	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10448075	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11135879	0.99[ASN][1000 genomes]
rs12056391	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12547187	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12676878	0.95[ASN][1000 genomes]
rs1425737	0.99[ASN][1000 genomes]
rs1425738	0.89[ASN][1000 genomes]
rs1425739	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17054049	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17054053	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17054097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2433069	0.89[ASN][1000 genomes]
rs2433072	0.84[ASN][1000 genomes]
rs2433094	0.90[ASN][1000 genomes]
rs2433123	0.89[ASN][1000 genomes]
rs2467727	0.90[ASN][1000 genomes]
rs2467728	0.89[ASN][1000 genomes]
rs2467729	0.90[ASN][1000 genomes]
rs34730485	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4872336	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6982678	0.97[ASN][1000 genomes]
rs71517834	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7825671	0.94[ASN][1000 genomes]
rs7841547	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890689	chr8:25124350-25719075	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv2755872	chr8:25499467-25598598	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:25501400-25503600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr8:25501400-25503600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr8:25501600-25503600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr8:25501600-25503600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:25501600-25503600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr8:25501600-25503600	Enhancers	Fetal Kidney	kidney
7	chr8:25501600-25504000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr8:25501800-25503400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr8:25501800-25503600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr8:25502000-25503400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr8:25502200-25503400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr8:25502200-25503600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr8:25502800-25503600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:25502800-25503600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:25503000-25503600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr8:25503200-25503400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:25503200-25503600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr8:25503200-25503600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain

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