Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10081452	0.89[ASN][1000 genomes]
rs11135879	0.90[ASN][1000 genomes]
rs12547187	0.88[ASN][1000 genomes]
rs12676878	0.87[ASN][1000 genomes]
rs1425737	0.90[ASN][1000 genomes]
rs1425738	1.00[ASN][1000 genomes]
rs1425739	0.90[ASN][1000 genomes]
rs17054049	0.88[ASN][1000 genomes]
rs17054053	0.86[ASN][1000 genomes]
rs17054097	0.89[ASN][1000 genomes]
rs2433069	0.99[ASN][1000 genomes]
rs2433072	0.91[ASN][1000 genomes]
rs2433094	0.99[ASN][1000 genomes]
rs2433123	1.00[ASN][1000 genomes]
rs2467727	0.99[ASN][1000 genomes]
rs2467729	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34730485	0.87[ASN][1000 genomes]
rs35695999	0.89[ASN][1000 genomes]
rs4872336	0.90[ASN][1000 genomes]
rs6982678	0.89[ASN][1000 genomes]
rs7825671	0.86[ASN][1000 genomes]
rs7841547	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890689	chr8:25124350-25719075	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2467728	TNFRSF10A	cis	parietal	SCAN
rs2467728	HR	cis	parietal	SCAN
rs2467728	CHRNA2	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:25489000-25501400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:25490200-25501600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:25494800-25501800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:25496000-25498400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:25496400-25497800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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