Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10081452	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11135879	0.96[ASN][1000 genomes]
rs12547187	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1425737	0.96[ASN][1000 genomes]
rs1425738	0.87[ASN][1000 genomes]
rs1425739	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17054049	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17054053	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17054097	0.95[ASN][1000 genomes]
rs2433069	0.86[ASN][1000 genomes]
rs2433094	0.88[ASN][1000 genomes]
rs2433123	0.87[ASN][1000 genomes]
rs2467727	0.86[ASN][1000 genomes]
rs2467728	0.87[ASN][1000 genomes]
rs2467729	0.88[ASN][1000 genomes]
rs34730485	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35695999	0.95[ASN][1000 genomes]
rs4872336	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6982678	0.95[ASN][1000 genomes]
rs7825671	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7841547	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890689	chr8:25124350-25719075	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:25483400-25488400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:25484400-25487600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr8:25484600-25488200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr8:25484600-25488400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:25484600-25488400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr8:25484800-25488400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:25484800-25488400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr8:25484800-25488600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr8:25484800-25489400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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