Variant report

Variant	rs10082155
Chromosome Location	chr1:69612571-69612572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10082005	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10082192	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10082242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11810068	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12561979	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12564688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12567267	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12568404	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1336157	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1613058	0.96[ASN][1000 genomes]
rs17097425	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17130848	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17130867	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17130869	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17130870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17483465	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72682283	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72682285	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72682291	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72682298	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830115	chr1:69593494-69736995	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69611400-69612600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:69611400-69613000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr1:69612200-69612600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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