Variant report

Variant	rs12561979
Chromosome Location	chr1:69595335-69595336
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10082005	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10082155	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10082192	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10082242	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11810068	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12564688	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12567267	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12568404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1336157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1613058	0.90[ASN][1000 genomes]
rs17097425	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17130848	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17130867	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17130869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17130870	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17483465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72682283	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72682285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72682291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72682298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830115	chr1:69593494-69736995	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69586400-69596800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr1:69592400-69595600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr1:69593600-69595600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr1:69593600-69595600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:69593800-69595800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr1:69595000-69595800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:69595200-69595600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr1:69595200-69595600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:69595200-69595600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr1:69595200-69595600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr1:69595200-69595600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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