Variant report

Variant	rs1613058
Chromosome Location	chr1:69624644-69624645
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10082005	0.93[ASN][1000 genomes]
rs10082155	0.96[ASN][1000 genomes]
rs10082192	0.96[ASN][1000 genomes]
rs10082242	0.96[ASN][1000 genomes]
rs11810068	0.96[ASN][1000 genomes]
rs12561979	0.90[ASN][1000 genomes]
rs12564688	0.96[ASN][1000 genomes]
rs12567267	0.97[ASN][1000 genomes]
rs12568404	0.90[ASN][1000 genomes]
rs1336157	0.84[ASN][1000 genomes]
rs1414663	0.83[EUR][1000 genomes]
rs17097425	0.96[ASN][1000 genomes]
rs17130848	0.82[ASN][1000 genomes]
rs17130867	0.96[ASN][1000 genomes]
rs17130869	0.96[ASN][1000 genomes]
rs17130870	0.93[ASN][1000 genomes]
rs17483465	0.94[ASN][1000 genomes]
rs72682283	0.82[ASN][1000 genomes]
rs72682285	0.84[ASN][1000 genomes]
rs72682291	0.90[ASN][1000 genomes]
rs72682298	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830115	chr1:69593494-69736995	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3432192	chr1:69615980-69630933	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
3	esv3413281	chr1:69615980-69641526	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69623800-69626200	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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