Variant report

Variant	rs10085309
Chromosome Location	chr6:132890153-132890154
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs9483475	1.00[EUR][1000 genomes]
rs9493354	1.00[EUR][1000 genomes]
rs9493356	1.00[EUR][1000 genomes]
rs9493359	1.00[EUR][1000 genomes]
rs9493370	1.00[EUR][1000 genomes]
rs9493374	1.00[EUR][1000 genomes]
rs9493375	0.89[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132888800-132890600	Enhancers	Brain Hippocampus Middle	brain
2	chr6:132888800-132892400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:132888800-132892400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr6:132889000-132891000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:132889000-132891800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr6:132889600-132890200	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr6:132889800-132891200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:132889800-132893200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:132890000-132891000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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