Variant report

Variant	rs9493356
Chromosome Location	chr6:132847709-132847710
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10085309	1.00[EUR][1000 genomes]
rs9483475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493359	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493370	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493374	0.86[YRI][hapmap];1.00[EUR][1000 genomes]
rs9493375	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132843400-132851200	Weak transcription	Osteobl	bone
2	chr6:132846200-132848000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:132846800-132848200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:132847000-132847800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr6:132847000-132848000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:132847000-132848200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:132847200-132847800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:132847200-132847800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr6:132847400-132848200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:132847400-132848400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:132847400-132848600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:132847600-132847800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:132847600-132848200	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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