Variant report
Variant | rs9493375 |
---|---|
Chromosome Location | chr6:132885048-132885049 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr6:132879343..132882169-chr6:132883230..132885783,2 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000235998 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10085309 | 0.89[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs9483475 | 1.00[EUR][1000 genomes] |
rs9483493 | 1.00[TSI][hapmap] |
rs9493354 | 1.00[EUR][1000 genomes] |
rs9493356 | 1.00[EUR][1000 genomes] |
rs9493359 | 1.00[EUR][1000 genomes] |
rs9493370 | 1.00[EUR][1000 genomes] |
rs9493374 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv532069 | chr6:132776411-133462292 | Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 90 gene(s) | inside rSNPs | diseases |