Variant report

Variant	rs9483475
Chromosome Location	chr6:132851469-132851470
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:132851306..132852152-chr6:133036396..133037034,4	MCF-7	breast:
2	chr6:132851274..132852275-chr6:133088982..133089973,4	MCF-7	breast:
3	chr6:132832536..132835308-chr6:132850516..132853191,2	MCF-7	breast:
4	chr6:132849284..132852259-chr6:133140271..133142677,3	MCF-7	breast:
5	chr6:132851315..132852196-chr6:133088788..133089995,3	K562	blood:
6	chr6:132165848..132168401-chr6:132849433..132851521,2	K562	blood:
7	chr6:132850905..132853335-chr6:133134795..133136865,2	K562	blood:

Variant related genes	Relation type
ENSG00000079950	Chromatin interaction
ENSG00000112306	Chromatin interaction
ENSG00000206754	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10085309	1.00[EUR][1000 genomes]
rs9493354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493370	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493374	1.00[EUR][1000 genomes]
rs9493375	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132851000-132851800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr6:132851200-132851600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:132851200-132851800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:132851200-132851800	Active TSS	Duodenum Mucosa	Duodenum
5	chr6:132851200-132851800	Active TSS	Osteobl	bone
6	chr6:132851400-132851600	Enhancers	H9 Cell Line	embryonic stem cell
7	chr6:132851400-132851600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:132851400-132851600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr6:132851400-132851600	Flanking Active TSS	Primary B cells from cord blood	blood
10	chr6:132851400-132851600	Enhancers	Primary B cells from peripheral blood	blood
11	chr6:132851400-132851600	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
12	chr6:132851400-132851600	Flanking Bivalent TSS/Enh	Primary T helper naive cells from peripheral blood	blood
13	chr6:132851400-132851600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
14	chr6:132851400-132851600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:132851400-132851600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:132851400-132851600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:132851400-132851600	Enhancers	Adipose Nuclei	Adipose
18	chr6:132851400-132851600	Enhancers	Liver	Liver
19	chr6:132851400-132851600	Flanking Active TSS	Brain Angular Gyrus	brain
20	chr6:132851400-132851600	Enhancers	Brain Substantia Nigra	brain
21	chr6:132851400-132851600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
22	chr6:132851400-132851600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
23	chr6:132851400-132851600	Flanking Active TSS	Placenta	Placenta
24	chr6:132851400-132851600	Enhancers	Pancreas	Pancrea
25	chr6:132851400-132851600	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 31	rectum
26	chr6:132851400-132851600	Enhancers	Rectal Smooth Muscle	rectum
27	chr6:132851400-132851600	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr6:132851400-132851600	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr6:132851400-132851600	Enhancers	GM12878-XiMat	blood
30	chr6:132851400-132851600	Flanking Active TSS	HepG2	liver
31	chr6:132851400-132851600	Flanking Active TSS	NHEK	skin
32	chr6:132851400-132851800	Active TSS	iPS-20b Cell Line	embryonic stem cell
33	chr6:132851400-132851800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:132851400-132851800	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:132851400-132851800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:132851400-132851800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:132851400-132851800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:132851400-132851800	Active TSS	Brain Cingulate Gyrus	brain
39	chr6:132851400-132851800	Active TSS	Brain Hippocampus Middle	brain
40	chr6:132851400-132851800	Active TSS	Fetal Intestine Large	intestine
41	chr6:132851400-132851800	Active TSS	Fetal Intestine Small	intestine
42	chr6:132851400-132851800	Active TSS	Fetal Kidney	kidney
43	chr6:132851400-132851800	Active TSS	Pancreatic Islets	Pancreatic Islet
44	chr6:132851400-132851800	Active TSS	Psoas Muscle	Psoas
45	chr6:132851400-132851800	Active TSS	Rectal Mucosa Donor 29	rectum
46	chr6:132851400-132851800	Active TSS	HMEC	breast

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