The 2.0 version of rSNPBase

Variant report

Variant rs10085533
Chromosome Location chr7:116541928-116541929
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:116503800-116554400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr7:116506000-116554600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr7:116511400-116554600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
4 chr7:116512000-116545400 Weak transcription NHLF lung
5 chr7:116515400-116559200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr7:116516800-116551200 Weak transcription Brain Angular Gyrus brain
7 chr7:116517200-116554600 Weak transcription Esophagus oesophagus
8 chr7:116517600-116556600 Weak transcription Psoas Muscle Psoas
9 chr7:116520000-116551200 Weak transcription Brain Inferior Temporal Lobe brain
10 chr7:116524600-116542200 Strong transcription Monocytes-CD14+_RO01746 blood
11 chr7:116524600-116543800 Weak transcription ES-WA7 Cell Line embryonic stem cell
12 chr7:116525800-116551200 Weak transcription Thymus Thymus
13 chr7:116525800-116554600 Weak transcription Aorta Aorta
14 chr7:116525800-116558400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
15 chr7:116525800-116559400 Weak transcription Colonic Mucosa Colon
16 chr7:116526000-116543800 Weak transcription Lung lung
17 chr7:116526200-116550000 Weak transcription Primary T killer memory cells from peripheral blood blood
18 chr7:116526200-116551200 Weak transcription Small Intestine intestine
19 chr7:116526600-116545400 Weak transcription ES-I3 Cell Line embryonic stem cell
20 chr7:116526600-116553600 Weak transcription Right Ventricle heart
21 chr7:116526800-116543200 Weak transcription Primary T helper naive cells fromperipheralblood blood
22 chr7:116526800-116546800 Weak transcription Sigmoid Colon Sigmoid Colon
23 chr7:116526800-116554600 Weak transcription Gastric stomach
24 chr7:116526800-116559400 Weak transcription Stomach Mucosa stomach
25 chr7:116527000-116543800 Weak transcription Ovary ovary
26 chr7:116527000-116546200 Weak transcription Brain Anterior Caudate brain
27 chr7:116527000-116560600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
28 chr7:116527200-116549600 Weak transcription Fetal Heart heart
29 chr7:116530200-116543600 Weak transcription Primary T cells from cord blood blood
30 chr7:116530200-116550200 Weak transcription Primary T helper naive cells from peripheral blood blood
31 chr7:116531400-116550600 Weak transcription H1 Cell Line embryonic stem cell
32 chr7:116531600-116548400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
33 chr7:116532000-116551200 Weak transcription Placenta Amnion Placenta Amnion
34 chr7:116532000-116559600 Strong transcription HSMM muscle
35 chr7:116533800-116542800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
36 chr7:116534000-116543800 Weak transcription HSMMtube muscle
37 chr7:116534000-116546600 Weak transcription Fetal Adrenal Gland Adrenal Gland
38 chr7:116534200-116542800 Weak transcription Fetal Intestine Small intestine
39 chr7:116534200-116546400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
40 chr7:116534200-116546400 Weak transcription Brain Hippocampus Middle brain
41 chr7:116534400-116542800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
42 chr7:116534400-116542800 Weak transcription Left Ventricle heart
43 chr7:116534400-116551800 Weak transcription Fetal Stomach stomach
44 chr7:116535600-116552000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
45 chr7:116537000-116542800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr7:116537600-116551200 Weak transcription Brain Germinal Matrix brain
47 chr7:116537800-116545400 Weak transcription H9 Cell Line embryonic stem cell
48 chr7:116537800-116551400 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
49 chr7:116538000-116559600 Strong transcription Primary T helper cells PMA-I stimulated --
50 chr7:116538200-116562400 Strong transcription Primary hematopoietic stem cells short term culture blood

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Last update: Aug 31, 2015