The 2.0 version of rSNPBase

Variant report

Variant rs59673590
Chromosome Location chr7:116345796-116345797
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:116332000-116355800 Weak transcription Fetal Muscle Leg muscle
2 chr7:116333600-116346000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
3 chr7:116333600-116346600 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr7:116333800-116351800 Weak transcription Gastric stomach
5 chr7:116334200-116347000 Weak transcription Placenta Amnion Placenta Amnion
6 chr7:116334200-116347200 Weak transcription Stomach Mucosa stomach
7 chr7:116336200-116346800 Weak transcription Rectal Mucosa Donor 29 rectum
8 chr7:116336600-116345800 Genic enhancers NHEK skin
9 chr7:116338200-116350800 Weak transcription Duodenum Mucosa Duodenum
10 chr7:116339600-116346600 Weak transcription Brain Angular Gyrus brain
11 chr7:116339600-116346600 Weak transcription Brain Inferior Temporal Lobe brain
12 chr7:116339600-116349000 Weak transcription Pancreas Pancrea
13 chr7:116339800-116346600 Weak transcription Sigmoid Colon Sigmoid Colon
14 chr7:116339800-116348000 Weak transcription Right Ventricle heart
15 chr7:116340200-116346000 Weak transcription Brain Substantia Nigra brain
16 chr7:116340200-116346600 Weak transcription Fetal Intestine Small intestine
17 chr7:116340200-116351800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr7:116340200-116354600 Weak transcription Fetal Stomach stomach
19 chr7:116340400-116345800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
20 chr7:116340400-116346800 Weak transcription NHLF lung
21 chr7:116340400-116356800 Weak transcription Brain Cingulate Gyrus brain
22 chr7:116341000-116350600 Weak transcription Fetal Kidney kidney
23 chr7:116341600-116346600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
24 chr7:116342400-116346200 Weak transcription NH-A brain
25 chr7:116342600-116346000 Weak transcription HSMMtube muscle
26 chr7:116342600-116346600 Weak transcription Skeletal Muscle Male skeletal muscle
27 chr7:116342800-116346600 Weak transcription Liver Liver
28 chr7:116342800-116350200 Weak transcription HepG2 liver
29 chr7:116343000-116346000 Weak transcription Psoas Muscle Psoas
30 chr7:116343000-116346200 Weak transcription Esophagus oesophagus
31 chr7:116343000-116346600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
32 chr7:116343000-116348400 Weak transcription Fetal Lung lung
33 chr7:116344000-116346600 Enhancers Hela-S3 cervix
34 chr7:116344400-116346600 Enhancers Muscle Satellite Cultured Cells --
35 chr7:116344600-116346200 Enhancers HUVEC blood vessel
36 chr7:116344600-116346400 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
37 chr7:116344600-116346400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr7:116344600-116346600 Enhancers HMEC breast
39 chr7:116344600-116346600 Enhancers NHDF-Ad bronchial
40 chr7:116344600-116346600 Enhancers Osteobl bone
41 chr7:116344600-116351800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
42 chr7:116344800-116345800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
43 chr7:116344800-116346000 Weak transcription Skeletal Muscle Female skeletal muscle
44 chr7:116344800-116349000 Enhancers Breast Myoepithelial Primary Cells Breast
45 chr7:116345200-116346000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr7:116345400-116345800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
47 chr7:116345400-116346200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
48 chr7:116345400-116346600 Enhancers HSMM muscle
49 chr7:116345600-116346000 Enhancers A549 lung

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Last update: Aug 31, 2015