Variant report
| Variant | rs10269134 |
|---|---|
| Chromosome Location | chr7:116494234-116494235 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000214188 | Chromatin interaction |
| ENSG00000227199 | Chromatin interaction |
| ENSG00000198898 | Chromatin interaction |
| ENSG00000004866 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10085533 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10225438 | 1.00[AMR][1000 genomes] |
| rs10231839 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10237255 | 1.00[AMR][1000 genomes] |
| rs10246090 | 1.00[AMR][1000 genomes] |
| rs10249156 | 1.00[AMR][1000 genomes] |
| rs10264289 | 1.00[AMR][1000 genomes] |
| rs10266132 | 0.86[AFR][1000 genomes] |
| rs10270658 | 1.00[AMR][1000 genomes] |
| rs13438538 | 1.00[AMR][1000 genomes] |
| rs28607430 | 0.83[AFR][1000 genomes] |
| rs59673590 | 1.00[AMR][1000 genomes] |
| rs73471139 | 1.00[AMR][1000 genomes] |
| rs73473205 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73473213 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73473239 | 1.00[AMR][1000 genomes] |
| rs73473243 | 1.00[AMR][1000 genomes] |
| rs73714198 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831107 | chr7:116414734-116649466 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 45 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
