Variant report

Variant	rs10086227
Chromosome Location	chr8:105331430-105331431
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11984805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2441899	0.93[ASN][1000 genomes]
rs2511593	1.00[CHB][hapmap]
rs55656109	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56199214	0.92[EUR][1000 genomes]
rs60625458	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60991889	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61682032	0.92[EUR][1000 genomes]
rs73696723	0.92[EUR][1000 genomes]
rs73696744	0.92[EUR][1000 genomes]
rs73696748	0.92[EUR][1000 genomes]
rs73696751	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1032775	chr8:105311364-105409972	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105328800-105337800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr8:105329400-105335600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr8:105330000-105332000	Weak transcription	Fetal Thymus	thymus
4	chr8:105330600-105335400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr8:105330800-105333800	Weak transcription	Right Atrium	heart
6	chr8:105330800-105335400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:105331200-105331600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr8:105331200-105332400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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