Variant report

Variant	rs60625458
Chromosome Location	chr8:105334459-105334460
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:105333966..105336509-chr8:105337874..105340861,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10086227	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11984805	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2441899	0.93[ASN][1000 genomes]
rs55656109	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56199214	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60991889	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61682032	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73696723	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73696744	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73696748	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73696751	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1032775	chr8:105311364-105409972	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105328800-105337800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr8:105329400-105335600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr8:105330600-105335400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr8:105330800-105335400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:105332200-105335000	Enhancers	Liver	Liver
6	chr8:105332200-105340800	Weak transcription	Spleen	Spleen
7	chr8:105332400-105337800	Weak transcription	Fetal Thymus	thymus
8	chr8:105332600-105336200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr8:105332600-105337800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr8:105332600-105341600	Weak transcription	Primary B cells from peripheral blood	blood
11	chr8:105332800-105337800	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr8:105333000-105341000	Weak transcription	Primary B cells from cord blood	blood
13	chr8:105333200-105334800	Enhancers	Adipose Nuclei	Adipose
14	chr8:105333600-105338000	Weak transcription	Lung	lung
15	chr8:105333600-105342400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr8:105333800-105334600	Enhancers	Fetal Muscle Leg	muscle
17	chr8:105334000-105334600	Enhancers	Gastric	stomach
18	chr8:105334000-105334600	Enhancers	K562	blood
19	chr8:105334000-105336000	Weak transcription	Right Atrium	heart
20	chr8:105334000-105337800	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr8:105334200-105338000	Weak transcription	Pancreas	Pancrea
22	chr8:105334400-105335600	Weak transcription	Ovary	ovary
23	chr8:105334400-105337800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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