Variant report

Variant	rs73696744
Chromosome Location	chr8:105353406-105353407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10086227	0.92[EUR][1000 genomes]
rs11984805	0.92[EUR][1000 genomes]
rs55656109	0.92[EUR][1000 genomes]
rs56199214	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60625458	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60991889	0.92[EUR][1000 genomes]
rs61682032	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73696723	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73696724	0.94[AFR][1000 genomes]
rs73696748	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73696751	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1032775	chr8:105311364-105409972	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105343200-105354400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:105349400-105358800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:105349600-105358200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:105351600-105354000	Enhancers	Fetal Thymus	thymus
5	chr8:105351600-105354000	Enhancers	Thymus	Thymus
6	chr8:105351800-105361200	Weak transcription	NHDF-Ad	bronchial
7	chr8:105352200-105354000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:105352200-105354000	Enhancers	Pancreas	Pancrea
9	chr8:105352400-105353800	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr8:105352400-105353800	Enhancers	Esophagus	oesophagus
11	chr8:105352400-105354000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr8:105352400-105354400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr8:105352400-105355600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr8:105352600-105353800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr8:105352600-105353800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr8:105352600-105355800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr8:105352800-105353600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr8:105352800-105353800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:105353000-105353600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr8:105353000-105353800	Weak transcription	Ovary	ovary
21	chr8:105353000-105354800	Weak transcription	Lung	lung
22	chr8:105353000-105356000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr8:105353200-105355600	Enhancers	H9 Cell Line	embryonic stem cell
24	chr8:105353200-105355600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr8:105353400-105353600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
26	chr8:105353400-105354200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
27	chr8:105353400-105355000	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr8:105353400-105355000	Enhancers	Stomach Smooth Muscle	stomach

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