Variant report

Variant	rs55656109
Chromosome Location	chr8:105340466-105340467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:105333966..105336509-chr8:105337874..105340861,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10086227	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11984805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2441899	0.93[ASN][1000 genomes]
rs56199214	0.92[EUR][1000 genomes]
rs60625458	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60991889	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61682032	0.92[EUR][1000 genomes]
rs73696723	0.92[EUR][1000 genomes]
rs73696744	0.92[EUR][1000 genomes]
rs73696748	0.92[EUR][1000 genomes]
rs73696751	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1032775	chr8:105311364-105409972	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105332200-105340800	Weak transcription	Spleen	Spleen
2	chr8:105332600-105341600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr8:105333000-105341000	Weak transcription	Primary B cells from cord blood	blood
4	chr8:105333600-105342400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:105335800-105342000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:105336400-105342400	Weak transcription	K562	blood
7	chr8:105336600-105342400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:105336800-105342400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr8:105336800-105342400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr8:105337800-105341000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr8:105337800-105343200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr8:105338000-105342800	Enhancers	GM12878-XiMat	blood
13	chr8:105338200-105340600	Weak transcription	Brain Substantia Nigra	brain
14	chr8:105338200-105342000	Weak transcription	NHDF-Ad	bronchial
15	chr8:105338200-105342200	Weak transcription	Colonic Mucosa	Colon
16	chr8:105338200-105342200	Weak transcription	Left Ventricle	heart
17	chr8:105338200-105342200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr8:105338200-105342200	Weak transcription	Right Ventricle	heart
19	chr8:105338200-105342400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr8:105338200-105342400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr8:105338200-105342400	Weak transcription	NHLF	lung
22	chr8:105338400-105340600	Weak transcription	Adipose Nuclei	Adipose
23	chr8:105338400-105342200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr8:105338400-105342200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr8:105338400-105342200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr8:105338400-105342200	Weak transcription	Ovary	ovary
27	chr8:105338400-105342400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr8:105338400-105342400	Weak transcription	Brain Hippocampus Middle	brain
29	chr8:105338400-105342400	Weak transcription	NH-A	brain
30	chr8:105338600-105341800	Weak transcription	Thymus	Thymus
31	chr8:105338800-105341600	Weak transcription	Fetal Lung	lung
32	chr8:105338800-105342800	Weak transcription	Stomach Smooth Muscle	stomach
33	chr8:105339000-105341400	Weak transcription	Liver	Liver
34	chr8:105339000-105342400	Weak transcription	Lung	lung
35	chr8:105339200-105341000	Weak transcription	Fetal Thymus	thymus
36	chr8:105339400-105340600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr8:105339800-105340600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr8:105340200-105341000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr8:105340200-105341800	Enhancers	Monocytes-CD14+_RO01746	blood
40	chr8:105340400-105342200	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr8:105340400-105342400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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