Variant report

Variant	rs10087512
Chromosome Location	chr8:10874919-10874920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10861649..10864572-chr8:10871901..10875246,3	K562	blood:
2	chr8:10869029..10871589-chr8:10873580..10875933,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10105947	0.83[AFR][1000 genomes]
rs10903336	0.87[LWK][hapmap]
rs4074692	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4074693	0.90[YRI][hapmap];0.92[AFR][1000 genomes]
rs4074694	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1022434	chr8:10866242-10916523	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10873000-10875000	Active TSS	Gastric	stomach
2	chr8:10873600-10875000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr8:10874400-10875000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:10874400-10875000	Bivalent Enhancer	Placenta	Placenta
5	chr8:10874400-10875000	Bivalent Enhancer	Fetal Thymus	thymus
6	chr8:10874400-10875000	Weak transcription	Pancreas	Pancrea
7	chr8:10874400-10875200	Enhancers	Esophagus	oesophagus
8	chr8:10874400-10879200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:10874400-10880200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:10874400-10892800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr8:10874600-10875000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
12	chr8:10874600-10875000	Enhancers	Primary B cells from peripheral blood	blood
13	chr8:10874600-10875000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr8:10874600-10875000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
15	chr8:10874600-10875000	Enhancers	HSMMtube	muscle
16	chr8:10874600-10875200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
17	chr8:10874600-10875600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:10874600-10875600	Enhancers	Primary T cells fromperipheralblood	blood
19	chr8:10874600-10876000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr8:10874600-10876200	Weak transcription	Fetal Heart	heart
21	chr8:10874600-10880000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr8:10874800-10875000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
23	chr8:10874800-10875000	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr8:10874800-10875000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr8:10874800-10875000	Enhancers	Brain Anterior Caudate	brain
26	chr8:10874800-10875000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
27	chr8:10874800-10875200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr8:10874800-10875200	Enhancers	Spleen	Spleen

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