Variant report

Variant	rs4074692
Chromosome Location	chr8:10874679-10874680
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:10867872..10870530-chr8:10872109..10874885,2	K562	blood:
2	chr8:10861649..10864572-chr8:10871901..10875246,3	K562	blood:
3	chr8:10869029..10871589-chr8:10873580..10875933,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10087512	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10105947	0.83[AFR][1000 genomes]
rs4074693	0.91[YRI][hapmap];0.92[AFR][1000 genomes]
rs4074694	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1022434	chr8:10866242-10916523	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10873000-10875000	Active TSS	Gastric	stomach
2	chr8:10873600-10875000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr8:10873800-10874800	Active TSS	NH-A	brain
4	chr8:10874200-10874800	Flanking Active TSS	Brain Anterior Caudate	brain
5	chr8:10874200-10874800	Weak transcription	Spleen	Spleen
6	chr8:10874400-10874800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
7	chr8:10874400-10874800	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
8	chr8:10874400-10874800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
9	chr8:10874400-10875000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr8:10874400-10875000	Bivalent Enhancer	Placenta	Placenta
11	chr8:10874400-10875000	Bivalent Enhancer	Fetal Thymus	thymus
12	chr8:10874400-10875000	Weak transcription	Pancreas	Pancrea
13	chr8:10874400-10875200	Enhancers	Esophagus	oesophagus
14	chr8:10874400-10879200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:10874400-10880200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr8:10874400-10892800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr8:10874600-10874800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
18	chr8:10874600-10874800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr8:10874600-10874800	Enhancers	Primary hematopoietic stem cells	blood
20	chr8:10874600-10874800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr8:10874600-10874800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr8:10874600-10874800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr8:10874600-10874800	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr8:10874600-10874800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr8:10874600-10874800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr8:10874600-10874800	Active TSS	Muscle Satellite Cultured Cells	--
27	chr8:10874600-10874800	Active TSS	Adipose Nuclei	Adipose
28	chr8:10874600-10874800	Enhancers	Brain Cingulate Gyrus	brain
29	chr8:10874600-10874800	Enhancers	Brain Hippocampus Middle	brain
30	chr8:10874600-10874800	Active TSS	Brain Inferior Temporal Lobe	brain
31	chr8:10874600-10874800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr8:10874600-10874800	Enhancers	Brain Substantia Nigra	brain
33	chr8:10874600-10874800	Enhancers	Colon Smooth Muscle	Colon
34	chr8:10874600-10874800	Bivalent Enhancer	Duodenum Mucosa	Duodenum
35	chr8:10874600-10874800	Bivalent/Poised TSS	Fetal Brain Male	brain
36	chr8:10874600-10874800	Bivalent Enhancer	Fetal Brain Female	brain
37	chr8:10874600-10874800	Bivalent Enhancer	Fetal Kidney	kidney
38	chr8:10874600-10874800	Enhancers	Pancreatic Islets	Pancreatic Islet
39	chr8:10874600-10874800	Enhancers	Rectal Smooth Muscle	rectum
40	chr8:10874600-10874800	Bivalent Enhancer	NHEK	skin
41	chr8:10874600-10875000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
42	chr8:10874600-10875000	Enhancers	Primary B cells from peripheral blood	blood
43	chr8:10874600-10875000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr8:10874600-10875000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
45	chr8:10874600-10875000	Enhancers	HSMMtube	muscle
46	chr8:10874600-10875200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
47	chr8:10874600-10875600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr8:10874600-10875600	Enhancers	Primary T cells fromperipheralblood	blood
49	chr8:10874600-10876000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr8:10874600-10876200	Weak transcription	Fetal Heart	heart

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