Variant report

Variant	rs10105947
Chromosome Location	chr8:10874300-10874301
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:10867872..10870530-chr8:10872109..10874885,2	K562	blood:
2	chr8:10861649..10864572-chr8:10871901..10875246,3	K562	blood:
3	chr8:10869029..10871589-chr8:10873580..10875933,2	MCF-7	breast:
4	chr8:10786051..10786569-chr8:10873648..10874515,2	MCF-7	breast:
5	chr8:10785284..10786125-chr8:10873662..10874301,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10087512	0.83[AFR][1000 genomes]
rs10216563	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs4074692	0.83[AFR][1000 genomes]
rs4074694	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1022434	chr8:10866242-10916523	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10871400-10874400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
2	chr8:10871800-10874400	Active TSS	H9 Cell Line	embryonic stem cell
3	chr8:10872400-10874400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:10872400-10874400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr8:10872400-10874400	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr8:10872400-10874400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:10872400-10874400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:10872400-10874400	Active TSS	Brain Inferior Temporal Lobe	brain
9	chr8:10872400-10874400	Active TSS	Colon Smooth Muscle	Colon
10	chr8:10872400-10874400	Active TSS	Rectal Smooth Muscle	rectum
11	chr8:10872400-10874600	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:10872400-10874600	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:10872400-10874600	Flanking Active TSS	Adipose Nuclei	Adipose
14	chr8:10872400-10874600	Active TSS	Brain Angular Gyrus	brain
15	chr8:10872400-10874600	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr8:10872400-10874600	Bivalent Enhancer	Fetal Brain Male	brain
17	chr8:10872400-10874600	Active TSS	HSMMtube	muscle
18	chr8:10872600-10874400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr8:10872600-10874400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr8:10872600-10874400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr8:10872600-10874400	Active TSS	HUES48 Cell Line	embryonic stem cell
22	chr8:10872600-10874400	Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr8:10872600-10874400	Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr8:10872600-10874400	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr8:10872600-10874400	Active TSS	Rectal Mucosa Donor 29	rectum
26	chr8:10872600-10874600	Active TSS	H1 Cell Line	embryonic stem cell
27	chr8:10872600-10874600	Active TSS	Breast Myoepithelial Primary Cells	Breast
28	chr8:10872600-10874600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr8:10872600-10874600	Active TSS	Primary T killer memory cells from peripheral blood	blood
30	chr8:10872600-10874600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr8:10872600-10874600	Active TSS	HSMM	muscle
32	chr8:10872800-10874400	Active TSS	Primary T cells from cord blood	blood
33	chr8:10872800-10874400	Active TSS	Aorta	Aorta
34	chr8:10872800-10874400	Flanking Active TSS	Liver	Liver
35	chr8:10872800-10874400	Active TSS	Brain Cingulate Gyrus	brain
36	chr8:10872800-10874400	Active TSS	Placenta Amnion	Placenta Amnion
37	chr8:10872800-10874400	Bivalent/Poised TSS	Osteobl	bone
38	chr8:10872800-10874600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
39	chr8:10872800-10874600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr8:10872800-10874600	Active TSS	Ovary	ovary
41	chr8:10872800-10874600	Bivalent/Poised TSS	NHLF	lung
42	chr8:10873000-10874400	Active TSS	iPS-18 Cell Line	embryonic stem cell
43	chr8:10873000-10874400	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr8:10873000-10874400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
45	chr8:10873000-10874400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
46	chr8:10873000-10874400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr8:10873000-10874400	Active TSS	Brain Substantia Nigra	brain
48	chr8:10873000-10874400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
49	chr8:10873000-10874400	Active TSS	Left Ventricle	heart
50	chr8:10873000-10874400	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle

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