Variant report

Variant	rs10087802
Chromosome Location	chr8:9948874-9948875
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10088890	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10090114	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10098342	0.90[JPT][hapmap]
rs10100022	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10216752	0.90[JPT][hapmap]
rs1023961	1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes]
rs11984513	1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[YRI][hapmap]
rs11990555	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13249486	0.89[JPT][hapmap]
rs13282106	0.89[JPT][hapmap]
rs1484639	0.89[JPT][hapmap]
rs1484640	0.88[JPT][hapmap]
rs1484642	0.89[JPT][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes]
rs1521190	0.85[ASN][1000 genomes]
rs1531918	0.89[JPT][hapmap];0.81[YRI][hapmap]
rs1531919	0.89[JPT][hapmap]
rs17151071	0.90[JPT][hapmap]
rs17151244	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17689674	0.89[JPT][hapmap]
rs17738724	1.00[CHB][hapmap];0.94[YRI][hapmap]
rs17739113	1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17739179	0.87[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2046399	0.89[JPT][hapmap]
rs2046400	0.89[JPT][hapmap]
rs2062333	0.88[JPT][hapmap]
rs2220149	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs2220150	1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2628140	1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs2661755	0.85[ASN][1000 genomes]
rs472514	0.94[YRI][hapmap]
rs4841281	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs4841284	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs4841285	0.85[AMR][1000 genomes]
rs534667	0.81[ASN][1000 genomes]
rs569446	0.85[ASN][1000 genomes]
rs57726127	0.85[AMR][1000 genomes]
rs59759359	0.89[ASN][1000 genomes]
rs60465334	0.89[ASN][1000 genomes]
rs658385	0.81[ASN][1000 genomes]
rs685353	0.81[ASN][1000 genomes]
rs7005350	0.89[JPT][hapmap]
rs728878	1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap];0.89[ASN][1000 genomes]
rs7812741	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[YRI][hapmap];0.89[ASN][1000 genomes]
rs7823314	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7823714	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7832670	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7833387	0.89[JPT][hapmap]
rs7833895	0.89[JPT][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes]
rs7843443	0.85[JPT][hapmap]
rs814405	1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs923046	1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes]
rs9329213	0.90[JPT][hapmap]
rs9329216	0.87[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs963592	1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916493	chr8:9806580-10029482	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1034343	chr8:9948342-10014155	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9940000-9949400	Weak transcription	Spleen	Spleen
2	chr8:9945200-9950000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr8:9947800-9949800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:9948000-9951400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:9948200-9952800	Weak transcription	NHDF-Ad	bronchial

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