Variant report

Variant	rs10089178
Chromosome Location	chr8:106824758-106824759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:106817558..106821579-chr8:106821916..106825672,4	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10505087	0.88[CHB][hapmap]
rs11993776	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1372615	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs16873680	0.88[CHB][hapmap]
rs16873687	0.88[CHB][hapmap]
rs16873688	0.88[CHB][hapmap]
rs16873692	0.88[CHB][hapmap]
rs16873710	0.82[ASN][1000 genomes]
rs16873754	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028553	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2304857	0.88[CHB][hapmap]
rs28566773	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28747388	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28847971	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2920050	0.87[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs3213923	0.88[CHB][hapmap]
rs57236783	0.94[ASN][1000 genomes]
rs57300723	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57880493	0.94[ASN][1000 genomes]
rs59137905	0.97[ASN][1000 genomes]
rs59365517	0.94[ASN][1000 genomes]
rs59989707	0.94[ASN][1000 genomes]
rs61374238	0.97[ASN][1000 genomes]
rs61559995	0.97[ASN][1000 genomes]
rs6469016	0.96[YRI][hapmap]
rs6981295	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6991211	0.96[YRI][hapmap]
rs7001025	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7007352	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7016937	0.86[CHB][hapmap]
rs7341648	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs746927	0.88[CHB][hapmap]
rs7839322	0.88[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831418	chr8:106648456-106833333	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106815600-106833600	Weak transcription	NH-A	brain
2	chr8:106815800-106833800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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