Variant report

Variant	rs59137905
Chromosome Location	chr8:106843656-106843657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10089178	0.97[ASN][1000 genomes]
rs10505086	0.93[EUR][1000 genomes]
rs10505087	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11986654	0.93[EUR][1000 genomes]
rs11993776	0.94[ASN][1000 genomes]
rs12334976	0.93[EUR][1000 genomes]
rs1372615	0.99[ASN][1000 genomes]
rs1465937	0.93[EUR][1000 genomes]
rs16873677	0.93[EUR][1000 genomes]
rs16873678	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16873680	0.93[EUR][1000 genomes]
rs16873687	0.93[EUR][1000 genomes]
rs16873688	0.93[EUR][1000 genomes]
rs16873692	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16873701	0.86[AMR][1000 genomes]
rs16873705	0.93[EUR][1000 genomes]
rs16873707	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16873710	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16873754	0.97[ASN][1000 genomes]
rs2028553	0.99[ASN][1000 genomes]
rs2304857	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28566773	0.97[ASN][1000 genomes]
rs28747388	0.97[ASN][1000 genomes]
rs28847971	0.96[ASN][1000 genomes]
rs2920050	0.99[ASN][1000 genomes]
rs3213923	0.93[EUR][1000 genomes]
rs3779781	0.86[AMR][1000 genomes]
rs3779783	0.93[EUR][1000 genomes]
rs3779784	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3779786	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57236783	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57300723	0.97[ASN][1000 genomes]
rs57880493	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58417679	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59365517	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59989707	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61374238	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61559995	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6981295	0.97[ASN][1000 genomes]
rs7001025	0.96[ASN][1000 genomes]
rs7007352	0.97[ASN][1000 genomes]
rs7016937	0.93[EUR][1000 genomes]
rs73306838	0.90[EUR][1000 genomes]
rs7341648	0.97[ASN][1000 genomes]
rs746927	0.93[EUR][1000 genomes]
rs7820813	0.92[EUR][1000 genomes]
rs7839322	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106842400-106844000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:106843000-106843800	Enhancers	NHEK	skin
3	chr8:106843000-106844000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr8:106843000-106844000	Enhancers	NH-A	brain
5	chr8:106843200-106843800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr8:106843200-106843800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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