Variant report

Variant	rs16873677
Chromosome Location	chr8:106795383-106795384
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10097329	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10505084	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10505086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10505087	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11986654	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12334976	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1372616	0.83[EUR][1000 genomes]
rs1465937	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16873678	1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes]
rs16873680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16873687	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16873688	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16873692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16873701	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16873705	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16873707	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16873710	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1899421	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2304857	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3213923	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3779781	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3779783	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3779784	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3779786	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57236783	0.90[EUR][1000 genomes]
rs57880493	0.90[EUR][1000 genomes]
rs58417679	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59137905	0.93[EUR][1000 genomes]
rs59365517	0.90[EUR][1000 genomes]
rs59989707	0.90[EUR][1000 genomes]
rs61374238	0.93[EUR][1000 genomes]
rs61559995	0.93[EUR][1000 genomes]
rs7016937	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73306838	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs746927	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7820813	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7839322	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831418	chr8:106648456-106833333	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv891260	chr8:106737459-106808078	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106782200-106800800	Weak transcription	K562	blood
2	chr8:106782800-106809000	Weak transcription	NH-A	brain
3	chr8:106783200-106813200	Weak transcription	Psoas Muscle	Psoas
4	chr8:106783200-106813200	Weak transcription	Right Ventricle	heart
5	chr8:106783400-106809000	Weak transcription	Aorta	Aorta
6	chr8:106787600-106809000	Weak transcription	Ovary	ovary
7	chr8:106791800-106813800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr8:106792200-106809400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr8:106792200-106813200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr8:106792600-106800600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr8:106792600-106809000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr8:106792800-106809000	Weak transcription	Adipose Nuclei	Adipose
13	chr8:106793000-106799000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:106793200-106796200	Weak transcription	HUVEC	blood vessel
15	chr8:106794200-106800000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr8:106794400-106797200	Weak transcription	Fetal Heart	heart
17	chr8:106794400-106799200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr8:106795200-106795400	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr8:106795200-106795400	Enhancers	Fetal Brain Male	brain

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