Variant report

Variant	rs1372616
Chromosome Location	chr8:106784139-106784140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:106774846..106777799-chr8:106783720..106786333,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10505083	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10505086	0.83[EUR][1000 genomes]
rs10505087	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11986654	0.83[EUR][1000 genomes]
rs12334976	0.83[EUR][1000 genomes]
rs1465937	0.83[EUR][1000 genomes]
rs16873632	0.82[ASN][1000 genomes]
rs16873677	0.83[EUR][1000 genomes]
rs16873678	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16873680	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16873687	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16873688	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16873692	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16873705	0.83[EUR][1000 genomes]
rs16873707	0.83[EUR][1000 genomes]
rs16873710	0.83[EUR][1000 genomes]
rs2304857	0.83[EUR][1000 genomes]
rs2343547	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2343548	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3213923	0.83[EUR][1000 genomes]
rs3779783	0.83[EUR][1000 genomes]
rs3779784	0.83[EUR][1000 genomes]
rs3779786	0.83[EUR][1000 genomes]
rs7016937	0.83[EUR][1000 genomes]
rs746927	0.83[EUR][1000 genomes]
rs7820813	0.81[EUR][1000 genomes]
rs7839322	0.88[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831418	chr8:106648456-106833333	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv891260	chr8:106737459-106808078	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106780800-106785600	Enhancers	Fetal Heart	heart
2	chr8:106781400-106784600	Enhancers	Ovary	ovary
3	chr8:106781400-106785200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:106781800-106784400	Weak transcription	Colon Smooth Muscle	Colon
5	chr8:106782200-106800800	Weak transcription	K562	blood
6	chr8:106782600-106787400	Weak transcription	Right Atrium	heart
7	chr8:106782600-106789200	Weak transcription	Brain Hippocampus Middle	brain
8	chr8:106782800-106809000	Weak transcription	NH-A	brain
9	chr8:106783000-106784600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr8:106783200-106788000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr8:106783200-106813200	Weak transcription	Psoas Muscle	Psoas
12	chr8:106783200-106813200	Weak transcription	Right Ventricle	heart
13	chr8:106783400-106787200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr8:106783400-106787400	Weak transcription	Stomach Mucosa	stomach
15	chr8:106783400-106809000	Weak transcription	Aorta	Aorta
16	chr8:106783600-106784200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr8:106783600-106784600	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr8:106783800-106784200	Enhancers	Fetal Brain Male	brain
19	chr8:106783800-106784400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr8:106783800-106784400	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr8:106783800-106784600	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr8:106783800-106784600	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr8:106783800-106785200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr8:106783800-106785200	Enhancers	Adipose Nuclei	Adipose
25	chr8:106783800-106785400	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr8:106783800-106785600	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr8:106783800-106787400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr8:106783800-106787400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr8:106784000-106784200	Enhancers	Brain Anterior Caudate	brain
30	chr8:106784000-106784200	Enhancers	Brain Germinal Matrix	brain
31	chr8:106784000-106785000	Weak transcription	Brain Cingulate Gyrus	brain
32	chr8:106784000-106786200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr8:106784000-106787000	Weak transcription	Fetal Brain Female	brain
34	chr8:106784000-106787000	Weak transcription	Fetal Lung	lung
35	chr8:106784000-106787000	Weak transcription	Left Ventricle	heart
36	chr8:106784000-106787600	Weak transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links