Variant report

Variant	rs10505083
Chromosome Location	chr8:106781213-106781214
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10505087	0.85[CEU][hapmap];0.86[TSI][hapmap]
rs1372616	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16873632	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16873678	0.85[CEU][hapmap]
rs16873680	0.85[CEU][hapmap]
rs16873687	0.85[CEU][hapmap]
rs16873688	0.85[CEU][hapmap]
rs16873692	0.85[CEU][hapmap]
rs2343547	0.96[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2343548	0.96[AFR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831418	chr8:106648456-106833333	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv891260	chr8:106737459-106808078	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106763800-106781400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr8:106768600-106781400	Weak transcription	K562	blood
3	chr8:106768800-106781400	Weak transcription	Ovary	ovary
4	chr8:106772600-106782400	Weak transcription	Psoas Muscle	Psoas
5	chr8:106780400-106781600	Weak transcription	Fetal Lung	lung
6	chr8:106780800-106785600	Enhancers	Fetal Heart	heart
7	chr8:106781000-106781800	Enhancers	Colon Smooth Muscle	Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links