Variant report

Variant	rs2343547
Chromosome Location	chr8:106763729-106763730
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:106761748..106764167-chr8:106767201..106769282,2	MCF-7	breast:
2	chr8:106763147..106766396-chr8:106768903..106771573,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10505083	0.96[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1372616	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16873601	0.91[CEU][hapmap]
rs16873632	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2343548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831418	chr8:106648456-106833333	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv891260	chr8:106737459-106808078	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106743600-106768400	Weak transcription	Psoas Muscle	Psoas
2	chr8:106750000-106768200	Weak transcription	K562	blood
3	chr8:106753800-106772000	Weak transcription	Aorta	Aorta
4	chr8:106757200-106768200	Weak transcription	Ovary	ovary
5	chr8:106759600-106765800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr8:106760000-106764600	Weak transcription	Brain Germinal Matrix	brain
7	chr8:106760000-106765400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr8:106760200-106764200	Weak transcription	Fetal Brain Male	brain
9	chr8:106760200-106765200	Weak transcription	Left Ventricle	heart
10	chr8:106760200-106767000	Weak transcription	Fetal Heart	heart
11	chr8:106760400-106764400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr8:106760800-106763800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr8:106760800-106767200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr8:106760800-106768400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr8:106761000-106765000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:106761000-106765600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr8:106762000-106763800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:106762400-106763800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr8:106762400-106766600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr8:106762400-106766600	Weak transcription	Brain Anterior Caudate	brain
21	chr8:106763000-106764000	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr8:106763200-106764200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr8:106763400-106764000	Enhancers	Fetal Brain Female	brain
24	chr8:106763400-106764400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr8:106763400-106764400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr8:106763600-106763800	Enhancers	H9 Cell Line	embryonic stem cell
27	chr8:106763600-106765600	Enhancers	H1 Cell Line	embryonic stem cell

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