Variant report

Variant	rs16873632
Chromosome Location	chr8:106766718-106766719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10505083	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10505087	0.85[CEU][hapmap]
rs1372616	0.82[ASN][1000 genomes]
rs16873678	0.88[CEU][hapmap]
rs16873680	0.88[CEU][hapmap]
rs16873687	0.88[CEU][hapmap]
rs16873688	0.88[CEU][hapmap]
rs16873692	0.88[CEU][hapmap]
rs2343547	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2343548	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831418	chr8:106648456-106833333	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv891260	chr8:106737459-106808078	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106743600-106768400	Weak transcription	Psoas Muscle	Psoas
2	chr8:106750000-106768200	Weak transcription	K562	blood
3	chr8:106753800-106772000	Weak transcription	Aorta	Aorta
4	chr8:106757200-106768200	Weak transcription	Ovary	ovary
5	chr8:106760200-106767000	Weak transcription	Fetal Heart	heart
6	chr8:106760800-106767200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr8:106760800-106768400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr8:106763800-106781400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:106764000-106767000	Weak transcription	Fetal Brain Female	brain
10	chr8:106765400-106766800	Weak transcription	Brain Hippocampus Middle	brain
11	chr8:106765400-106767000	Weak transcription	Fetal Brain Male	brain
12	chr8:106765400-106768200	Weak transcription	Left Ventricle	heart
13	chr8:106765400-106768400	Weak transcription	Right Ventricle	heart
14	chr8:106765400-106769000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:106765600-106768400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr8:106765800-106767200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr8:106766000-106768000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr8:106766000-106769200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr8:106766200-106768200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr8:106766600-106766800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr8:106766600-106767000	Enhancers	Brain Anterior Caudate	brain
22	chr8:106766600-106768400	Enhancers	Brain Germinal Matrix	brain

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