Variant report

Variant	rs3779783
Chromosome Location	chr8:106792170-106792171
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10097329	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10505084	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10505086	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10505087	0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11986654	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12334976	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1372616	0.83[EUR][1000 genomes]
rs1465937	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16873677	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16873678	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16873680	0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16873687	0.90[JPT][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16873688	0.90[JPT][hapmap];0.97[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16873692	0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16873701	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16873705	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16873707	1.00[EUR][1000 genomes]
rs16873710	1.00[EUR][1000 genomes]
rs1899421	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2304857	0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3213923	0.90[JPT][hapmap];0.97[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3779781	0.85[EUR][1000 genomes]
rs3779784	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3779786	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57236783	0.90[EUR][1000 genomes]
rs57880493	0.90[EUR][1000 genomes]
rs58417679	0.97[EUR][1000 genomes]
rs59137905	0.93[EUR][1000 genomes]
rs59365517	0.90[EUR][1000 genomes]
rs59989707	0.90[EUR][1000 genomes]
rs61374238	0.93[EUR][1000 genomes]
rs61559995	0.93[EUR][1000 genomes]
rs7016937	0.90[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73306838	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs746927	0.90[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7820813	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7839322	0.90[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831418	chr8:106648456-106833333	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv891260	chr8:106737459-106808078	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106782200-106800800	Weak transcription	K562	blood
2	chr8:106782800-106809000	Weak transcription	NH-A	brain
3	chr8:106783200-106813200	Weak transcription	Psoas Muscle	Psoas
4	chr8:106783200-106813200	Weak transcription	Right Ventricle	heart
5	chr8:106783400-106809000	Weak transcription	Aorta	Aorta
6	chr8:106787600-106809000	Weak transcription	Ovary	ovary
7	chr8:106788000-106792600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:106789400-106793200	Enhancers	HUVEC	blood vessel
9	chr8:106790800-106792600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr8:106790800-106792600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr8:106790800-106792800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:106791000-106795000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr8:106791200-106792400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr8:106791200-106792600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:106791200-106792800	Enhancers	Brain Germinal Matrix	brain
16	chr8:106791400-106792200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:106791400-106792600	Enhancers	Fetal Brain Female	brain
18	chr8:106791400-106792800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr8:106791400-106792800	Enhancers	NHEK	skin
20	chr8:106791400-106793400	Enhancers	Primary hematopoietic stem cells	blood
21	chr8:106791400-106793400	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr8:106791600-106792200	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr8:106791600-106792200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr8:106791600-106792200	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr8:106791600-106792800	Enhancers	Muscle Satellite Cultured Cells	--
26	chr8:106791800-106792200	Enhancers	Fetal Heart	heart
27	chr8:106791800-106792200	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr8:106791800-106792400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr8:106791800-106792600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr8:106791800-106792600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr8:106791800-106792600	Enhancers	Fetal Lung	lung
32	chr8:106791800-106792600	Enhancers	Rectal Smooth Muscle	rectum
33	chr8:106791800-106792600	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr8:106791800-106792600	Enhancers	HSMMtube	muscle
35	chr8:106791800-106792600	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr8:106791800-106792800	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr8:106791800-106792800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr8:106791800-106793000	Weak transcription	Stomach Mucosa	stomach
39	chr8:106791800-106795200	Weak transcription	Fetal Brain Male	brain
40	chr8:106791800-106813800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr8:106792000-106792400	Enhancers	Rectal Mucosa Donor 29	rectum

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