Variant report

Variant	rs57236783
Chromosome Location	chr8:106861473-106861474
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10089178	0.94[ASN][1000 genomes]
rs10505086	0.90[EUR][1000 genomes]
rs10505087	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11986654	0.90[EUR][1000 genomes]
rs11993776	0.92[ASN][1000 genomes]
rs12334976	0.90[EUR][1000 genomes]
rs1372615	0.96[ASN][1000 genomes]
rs1465937	0.90[EUR][1000 genomes]
rs16873677	0.90[EUR][1000 genomes]
rs16873678	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16873680	0.90[EUR][1000 genomes]
rs16873687	0.90[EUR][1000 genomes]
rs16873688	0.90[EUR][1000 genomes]
rs16873692	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16873701	0.81[AMR][1000 genomes]
rs16873705	0.90[EUR][1000 genomes]
rs16873707	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16873710	0.90[EUR][1000 genomes]
rs16873754	0.94[ASN][1000 genomes]
rs2028553	0.96[ASN][1000 genomes]
rs2304857	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28566773	0.94[ASN][1000 genomes]
rs28747388	0.94[ASN][1000 genomes]
rs28847971	0.99[ASN][1000 genomes]
rs2920050	0.96[ASN][1000 genomes]
rs3213923	0.90[EUR][1000 genomes]
rs3779781	0.81[AMR][1000 genomes]
rs3779783	0.90[EUR][1000 genomes]
rs3779784	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3779786	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57300723	0.94[ASN][1000 genomes]
rs57880493	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58417679	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59137905	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59365517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59989707	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61374238	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61559995	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6981295	0.94[ASN][1000 genomes]
rs7001025	0.99[ASN][1000 genomes]
rs7007352	0.94[ASN][1000 genomes]
rs7016937	0.90[EUR][1000 genomes]
rs73306838	0.87[EUR][1000 genomes]
rs7341648	0.94[ASN][1000 genomes]
rs746927	0.90[EUR][1000 genomes]
rs7820813	0.89[EUR][1000 genomes]
rs7839322	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106856400-106861600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:106859400-106862000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr8:106859400-106862200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr8:106859400-106862600	Enhancers	HMEC	breast
5	chr8:106859400-106862600	Enhancers	NHEK	skin
6	chr8:106859600-106862600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:106860400-106861600	Weak transcription	Hela-S3	cervix
8	chr8:106861200-106861800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:106861400-106861800	Enhancers	Esophagus	oesophagus
10	chr8:106861400-106862000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

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