Variant report

Variant	rs16873710
Chromosome Location	chr8:106811824-106811825
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10089178	0.82[ASN][1000 genomes]
rs10097329	0.85[EUR][1000 genomes]
rs10505084	0.85[EUR][1000 genomes]
rs10505086	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10505087	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11986654	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11993776	0.85[ASN][1000 genomes]
rs12334976	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1372615	0.81[ASN][1000 genomes]
rs1372616	0.83[EUR][1000 genomes]
rs1465937	1.00[EUR][1000 genomes]
rs16873677	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16873678	1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes]
rs16873680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16873687	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16873688	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16873692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16873701	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16873705	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16873707	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16873754	0.82[ASN][1000 genomes]
rs1899421	0.85[EUR][1000 genomes]
rs2028553	0.81[ASN][1000 genomes]
rs2304857	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28566773	0.82[ASN][1000 genomes]
rs28747388	0.82[ASN][1000 genomes]
rs2920050	0.81[ASN][1000 genomes]
rs3213923	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3779781	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3779783	1.00[EUR][1000 genomes]
rs3779784	1.00[EUR][1000 genomes]
rs3779786	1.00[EUR][1000 genomes]
rs57236783	0.90[EUR][1000 genomes]
rs57300723	0.82[ASN][1000 genomes]
rs57880493	0.90[EUR][1000 genomes]
rs58417679	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59137905	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59365517	0.90[EUR][1000 genomes]
rs59989707	0.90[EUR][1000 genomes]
rs61374238	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61559995	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6981295	0.82[ASN][1000 genomes]
rs7007352	0.82[ASN][1000 genomes]
rs7016937	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73306838	0.97[EUR][1000 genomes]
rs7341648	0.82[ASN][1000 genomes]
rs746927	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7820813	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7839322	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831418	chr8:106648456-106833333	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106783200-106813200	Weak transcription	Psoas Muscle	Psoas
2	chr8:106783200-106813200	Weak transcription	Right Ventricle	heart
3	chr8:106791800-106813800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:106792200-106813200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr8:106796600-106823600	Weak transcription	HUVEC	blood vessel
6	chr8:106800200-106814000	Weak transcription	Fetal Heart	heart
7	chr8:106801200-106812600	Weak transcription	Esophagus	oesophagus
8	chr8:106801200-106813400	Weak transcription	Fetal Stomach	stomach
9	chr8:106805000-106817200	Weak transcription	Fetal Brain Male	brain
10	chr8:106807600-106813000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:106807600-106813000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr8:106807600-106813400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:106807600-106813400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:106807600-106814000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr8:106807800-106813200	Weak transcription	Spleen	Spleen
16	chr8:106807800-106813600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr8:106808000-106814400	Weak transcription	Brain Angular Gyrus	brain
18	chr8:106808200-106813400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr8:106808600-106816000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:106808800-106815400	Strong transcription	Stomach Smooth Muscle	stomach
21	chr8:106809000-106815600	Strong transcription	Adipose Nuclei	Adipose
22	chr8:106809000-106815800	Strong transcription	Ovary	ovary
23	chr8:106809400-106813200	Weak transcription	Brain Anterior Caudate	brain
24	chr8:106809400-106813200	Weak transcription	Colon Smooth Muscle	Colon
25	chr8:106809400-106813200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr8:106809400-106813200	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr8:106809600-106813200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr8:106809800-106813000	Weak transcription	NH-A	brain
29	chr8:106810000-106813400	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr8:106810200-106813400	Weak transcription	K562	blood
31	chr8:106810400-106813800	Weak transcription	Fetal Brain Female	brain
32	chr8:106810800-106814000	Weak transcription	Brain Hippocampus Middle	brain
33	chr8:106811000-106816400	Weak transcription	Brain Substantia Nigra	brain
34	chr8:106811200-106812200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr8:106811200-106812400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr8:106811200-106812400	Weak transcription	Aorta	Aorta
37	chr8:106811200-106812800	Weak transcription	Left Ventricle	heart
38	chr8:106811200-106813200	Weak transcription	Fetal Muscle Leg	muscle
39	chr8:106811200-106813400	Weak transcription	Fetal Muscle Trunk	muscle
40	chr8:106811200-106813400	Weak transcription	Fetal Thymus	thymus
41	chr8:106811200-106824000	Weak transcription	Thymus	Thymus
42	chr8:106811400-106812200	Enhancers	Primary T cells from cord blood	blood
43	chr8:106811400-106813200	Weak transcription	Gastric	stomach
44	chr8:106811800-106815200	Strong transcription	Fetal Lung	lung
45	chr8:106811800-106816200	Weak transcription	Brain Cingulate Gyrus	brain
46	chr8:106811800-106816400	Weak transcription	Rectal Smooth Muscle	rectum

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