Variant report

Variant	rs10097329
Chromosome Location	chr8:106787553-106787554
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10505084	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10505086	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10505087	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs11986654	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12334976	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1465937	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16873677	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16873678	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16873680	1.00[CEU][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes]
rs16873687	1.00[CEU][hapmap];0.90[JPT][hapmap];0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs16873688	1.00[CEU][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16873692	1.00[CEU][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes]
rs16873701	1.00[EUR][1000 genomes]
rs16873705	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16873707	0.85[EUR][1000 genomes]
rs16873710	0.85[EUR][1000 genomes]
rs1899421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2304857	0.90[JPT][hapmap];0.85[EUR][1000 genomes]
rs3213923	0.90[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3779781	1.00[EUR][1000 genomes]
rs3779783	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3779784	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3779786	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58417679	0.82[EUR][1000 genomes]
rs7016937	0.90[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73306838	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs746927	0.90[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7820813	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7839322	0.85[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831418	chr8:106648456-106833333	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv891260	chr8:106737459-106808078	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106782200-106800800	Weak transcription	K562	blood
2	chr8:106782600-106789200	Weak transcription	Brain Hippocampus Middle	brain
3	chr8:106782800-106809000	Weak transcription	NH-A	brain
4	chr8:106783200-106788000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr8:106783200-106813200	Weak transcription	Psoas Muscle	Psoas
6	chr8:106783200-106813200	Weak transcription	Right Ventricle	heart
7	chr8:106783400-106809000	Weak transcription	Aorta	Aorta
8	chr8:106784000-106787600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr8:106784400-106787600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr8:106784600-106787600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr8:106785200-106791800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr8:106786200-106788000	Enhancers	Brain Germinal Matrix	brain
13	chr8:106786200-106788800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr8:106786800-106787600	Enhancers	Ovary	ovary
15	chr8:106786800-106788200	Enhancers	Fetal Brain Male	brain
16	chr8:106787000-106787600	Enhancers	Brain Anterior Caudate	brain
17	chr8:106787000-106788000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:106787000-106788000	Enhancers	Fetal Brain Female	brain
19	chr8:106787000-106788200	Enhancers	Fetal Heart	heart
20	chr8:106787000-106788200	Enhancers	Fetal Lung	lung
21	chr8:106787000-106788200	Enhancers	Left Ventricle	heart
22	chr8:106787200-106787600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr8:106787200-106788600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr8:106787400-106787600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr8:106787400-106788000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr8:106787400-106788200	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr8:106787400-106788200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr8:106787400-106788200	Enhancers	Right Atrium	heart
29	chr8:106787400-106789600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr8:106787400-106790000	Enhancers	Stomach Mucosa	stomach

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