Variant report
| Variant | rs10089957 |
|---|---|
| Chromosome Location | chr8:49238688-49238689 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:49238452..49240367-chr8:49240866..49242918,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10090055 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes] |
| rs10093331 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes] |
| rs10094488 | 1.00[EUR][1000 genomes] |
| rs10103603 | 0.95[EUR][1000 genomes] |
| rs10107550 | 0.82[EUR][1000 genomes] |
| rs10111777 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs10111784 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes] |
| rs10441555 | 0.98[EUR][1000 genomes] |
| rs11779066 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11780976 | 0.98[EUR][1000 genomes] |
| rs11783234 | 0.98[EUR][1000 genomes] |
| rs12334641 | 0.86[EUR][1000 genomes] |
| rs16935766 | 0.95[EUR][1000 genomes] |
| rs16935801 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes] |
| rs28425774 | 0.98[EUR][1000 genomes] |
| rs28650140 | 0.98[EUR][1000 genomes] |
| rs28690717 | 0.98[EUR][1000 genomes] |
| rs28759715 | 0.98[EUR][1000 genomes] |
| rs4873278 | 0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4873279 | 0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7017698 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs7833910 | 0.98[EUR][1000 genomes] |
| rs7834216 | 0.93[EUR][1000 genomes] |
| rs7838754 | 0.98[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831310 | chr8:49080177-49256440 | Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv831311 | chr8:49106160-49290209 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1018242 | chr8:49190915-49243694 | Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv539600 | chr8:49190915-49243694 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:49233400-49239600 | Weak transcription | Fetal Stomach | stomach |
