Variant report
| Variant | rs4873279 |
|---|---|
| Chromosome Location | chr8:49274249-49274250 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10089957 | 0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10090055 | 1.00[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs10093331 | 1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes] |
| rs10094488 | 0.91[EUR][1000 genomes] |
| rs10103603 | 0.86[EUR][1000 genomes] |
| rs10107550 | 0.91[EUR][1000 genomes] |
| rs10111777 | 1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs10111784 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes] |
| rs10441555 | 0.88[EUR][1000 genomes] |
| rs11779066 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11780976 | 0.88[EUR][1000 genomes] |
| rs11783234 | 0.88[EUR][1000 genomes] |
| rs12334641 | 0.95[EUR][1000 genomes] |
| rs16935766 | 0.86[EUR][1000 genomes] |
| rs16935801 | 1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes] |
| rs16936586 | 0.82[EUR][1000 genomes] |
| rs28425774 | 0.88[EUR][1000 genomes] |
| rs28650140 | 0.88[EUR][1000 genomes] |
| rs28690717 | 0.88[EUR][1000 genomes] |
| rs28759715 | 0.88[EUR][1000 genomes] |
| rs4873278 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7017698 | 1.00[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs7833910 | 0.88[EUR][1000 genomes] |
| rs7834216 | 0.84[EUR][1000 genomes] |
| rs7838754 | 0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831311 | chr8:49106160-49290209 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:49274000-49275200 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
