Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10089957	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10090055	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10093331	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10094488	0.91[EUR][1000 genomes]
rs10103603	0.86[EUR][1000 genomes]
rs10107550	0.91[EUR][1000 genomes]
rs10111777	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs10111784	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs10441555	0.88[EUR][1000 genomes]
rs11779066	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11780976	0.88[EUR][1000 genomes]
rs11783234	0.88[EUR][1000 genomes]
rs12334641	0.95[EUR][1000 genomes]
rs16935766	0.86[EUR][1000 genomes]
rs16935801	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs16936586	0.82[EUR][1000 genomes]
rs28425774	0.88[EUR][1000 genomes]
rs28650140	0.88[EUR][1000 genomes]
rs28690717	0.88[EUR][1000 genomes]
rs28759715	0.88[EUR][1000 genomes]
rs4873279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017698	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7833910	0.88[EUR][1000 genomes]
rs7834216	0.84[EUR][1000 genomes]
rs7838754	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831311	chr8:49106160-49290209	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49274000-49275200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search: